1kyo: Difference between revisions

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Revision as of 20:42, 25 July 2012

File:1kyo.png

1kyo, resolution 2.97Å ()

Ligands:

, ,

Non-Standard Residues:

Activity:

Ubiquinol--cytochrome-c reductase, with EC number 1.10.2.2

Related:

1ezv, 1kb9

Structural annotation:

Resources:

CATH : 1Kyoa02, 1Kyoa01, 1Kyob02, 1Kyob01, 1Kyoc00, 1Kyod01, 1Kyod02, 1Kyoe01, 1Kyoe02, 1Kyof00, 1Kyog00, 1Kyoh00, 1Kyoi00, 1Kyoj00, 1Kyok00, 1Kyol02, 1Kyol01, 1Kyom02, 1Kyom01, 1Kyon00, 1Kyoo01, 1Kyoo02, 1Kyop01, 1Kyop02, 1Kyoq00, 1Kyor00, 1Kyos00, 1Kyot00, 1Kyou00, 1Kyov00, 1Kyow00
InterPro : Ipr011237, Ipr001431, Ipr007863, Ipr011249, Ipr011765, Ipr005798, Ipr005797, Ipr002326, Ipr009056, Ipr004192, Ipr006317, Ipr005806, Ipr014349, Ipr005805, Ipr003422, Ipr003197, Ipr004205, Ipr008027, Ipr003088, Ipr012125, Ipr002327
Pfam : PF00675, PF05193, PF00032, PF00033, PF02167, PF02921, PF00355, PF02271, PF02939, PF05365, PF00034
SCOP : d1kyoa2, d1kyoa1, d1kyob2, d1kyob1, d1kyoc2, d1kyoc3, d1kyod2, d1kyod1, d1kyoe2, d1kyoe1, d1kyof_, d1kyog_, d1kyoh_, d1kyoi_, d1kyol1, d1kyol2, d1kyom2, d1kyom1, d1kyon2, d1kyon3, d1kyoo2, d1kyoo1, d1kyop1, d1kyop2, d1kyoq_, d1kyor_, d1kyos_, d1kyot_, d1kyow_
UniProt : P07256, P07257, P00163, P07143, P08067, P00127, P00128, P08525, P22289, P00044

Functional annotation:
Cellular component:	mitochondrial respiratory chain mitochondrion membrane mitochondrial respiratory chain complex III integral to membrane mitochondrial inner membrane mitochondrial envelope mitochondrial intermembrane space
Biological process:	aerobic respiration electron transport proteolysis transport mitochondrial electron transport, ubiquinol to cytochrome c oxidative phosphorylation cytochrome bc(1) complex assembly iron-sulfur cluster assembly
Molecular function:	zinc ion binding protein binding metalloendopeptidase activity ubiquinol-cytochrome-c reductase activity iron ion binding metal ion binding electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity oxidoreductase activity heme binding electron carrier activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding

Evolutionary conservation:

Toggle Conservation Colors:

Rows = identical sequences:

Further Information:

Caveats,

Explanation,
Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

YEAST CYTOCHROME BC1 COMPLEX WITH BOUND SUBSTRATE CYTOCHROME CYEAST CYTOCHROME BC1 COMPLEX WITH BOUND SUBSTRATE CYTOCHROME C

Template:ABSTRACT PUBMED 11880631

About this StructureAbout this Structure

1kyo is a 23 chain structure of Cytochrome c with sequence from Mus musculus and Saccharomyces cerevisiae. The December 2002 RCSB PDB Molecule of the Month feature on Cytochrome c by David S. Goodsell is 10.2210/rcsb_pdb/mom_2002_12. Full crystallographic information is available from OCA.

ReferenceReference

^{[xtra 1]}^{[xtra 2]}

↑ Lange C, Hunte C. Crystal structure of the yeast cytochrome bc1 complex with its bound substrate cytochrome c. Proc Natl Acad Sci U S A. 2002 Mar 5;99(5):2800-5. PMID:11880631 doi:10.1073/pnas.052704699
↑ Janzon J, Yuan Q, Malatesta F, Hellwig P, Ludwig B, Durham B, Millett F. Probing the Paracoccus denitrificans cytochrome c(1)-cytochrome c(552) interaction by mutagenesis and fast kinetics. Biochemistry. 2008 Dec 9;47(49):12974-84. PMID:19006325 doi:10.1021/bi800932c

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

[1] Lange C, Hunte C. Crystal structure of the yeast cytochrome bc1 complex with its bound substrate cytochrome c. Proc Natl Acad Sci U S A. 2002 Mar 5;99(5):2800-5. PMID:11880631 doi:10.1073/pnas.052704699

[2] Janzon J, Yuan Q, Malatesta F, Hellwig P, Ludwig B, Durham B, Millett F. Probing the Paracoccus denitrificans cytochrome c(1)-cytochrome c(552) interaction by mutagenesis and fast kinetics. Biochemistry. 2008 Dec 9;47(49):12974-84. PMID:19006325 doi:10.1021/bi800932c

[xtra 1]

[xtra 2]

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-<!--
-The line below this paragraph, containing "STRUCTURE_1kyo", creates the "Structure Box" on the page.
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-or leave the SCENE parameter empty for the default display.
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 {{STRUCTURE_1kyo|  PDB=1kyo  |  SCENE=  }}
 ===YEAST CYTOCHROME BC1 COMPLEX WITH BOUND SUBSTRATE CYTOCHROME C===
-<!--
-The line below this paragraph, {{ABSTRACT_PUBMED_11880631}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 11880631 is the PubMed ID number.
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 {{ABSTRACT_PUBMED_11880631}}
 ==About this Structure==
-KYO is a 23 chains structure with sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. The December 2002 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Cytochrome c''  by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2002_12 10.2210/rcsb_pdb/mom_2002_12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KYO OCA].
+[[1kyo]] is a 23 chain structure of [[Cytochrome c]] with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. The December 2002 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Cytochrome c''  by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2002_12 10.2210/rcsb_pdb/mom_2002_12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KYO OCA].
+==See Also==
+*[[Cytochrome c|Cytochrome c]]
 ==Reference==
-<ref group="xtra">PMID:11880631</ref><references group="xtra"/>
+<ref group="xtra">PMID:011880631</ref><ref group="xtra">PMID:019006325</ref><references group="xtra"/>
 [[Category: Cytochrome c]]
 [[Category: Mus musculus]]
@@ Line 35: / Line 26: @@
 [[Category: Enzyme substrate complex]]
 [[Category: Multisubunit membrane protein complex]]
-[[Category: Oxidoreductase/electron transport complex]]
+[[Category: Oxidoreductase-electron transport complex]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 21 09:32:37 2010''

1kyo: Difference between revisions

Revision as of 20:42, 25 July 2012

Contents

YEAST CYTOCHROME BC1 COMPLEX WITH BOUND SUBSTRATE CYTOCHROME CYEAST CYTOCHROME BC1 COMPLEX WITH BOUND SUBSTRATE CYTOCHROME C

About this StructureAbout this Structure

See AlsoSee Also

ReferenceReference

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1kyo: Difference between revisions

Revision as of 20:42, 25 July 2012

YEAST CYTOCHROME BC1 COMPLEX WITH BOUND SUBSTRATE CYTOCHROME CYEAST CYTOCHROME BC1 COMPLEX WITH BOUND SUBSTRATE CYTOCHROME C

About this StructureAbout this Structure

See AlsoSee Also

ReferenceReference

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