3csm: Difference between revisions
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[[Image:3csm.gif|left|200px]]<br /><applet load="3csm" size=" | [[Image:3csm.gif|left|200px]]<br /><applet load="3csm" size="350" color="white" frame="true" align="right" spinBox="true" | ||
caption="3csm, resolution 3.0Å" /> | caption="3csm, resolution 3.0Å" /> | ||
'''STRUCTURE OF YEAST CHORISMATE MUTASE WITH BOUND TRP AND AN ENDOOXABICYCLIC INHIBITOR'''<br /> | '''STRUCTURE OF YEAST CHORISMATE MUTASE WITH BOUND TRP AND AN ENDOOXABICYCLIC INHIBITOR'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
3CSM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with TRP and TSA as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Chorismate_mutase Chorismate mutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.99.5 5.4.99.5] Known structural/functional Sites: <scene name='pdbsite=ACB:Active Site'>ACB</scene>, <scene name='pdbsite=ACT:Active Site'>ACT</scene>, <scene name='pdbsite=REB:Regulatory Binding Site For TRP And TYR'>REB</scene> and <scene name='pdbsite=REG:Regulatory Binding Site For TRP And TYR'>REG</scene>. Full crystallographic information is available from [http:// | 3CSM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with <scene name='pdbligand=TRP:'>TRP</scene> and <scene name='pdbligand=TSA:'>TSA</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Chorismate_mutase Chorismate mutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.99.5 5.4.99.5] Known structural/functional Sites: <scene name='pdbsite=ACB:Active+Site'>ACB</scene>, <scene name='pdbsite=ACT:Active+Site'>ACT</scene>, <scene name='pdbsite=REB:Regulatory+Binding+Site+For+TRP+And+TYR'>REB</scene> and <scene name='pdbsite=REG:Regulatory+Binding+Site+For+TRP+And+TYR'>REG</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSM OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: transition state analog]] | [[Category: transition state analog]] | ||
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Revision as of 11:51, 3 February 2008
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STRUCTURE OF YEAST CHORISMATE MUTASE WITH BOUND TRP AND AN ENDOOXABICYCLIC INHIBITOR
OverviewOverview
BACKGROUND: Chorismate mutase (CM) catalyzes the Claisen rearrangement of, chorismate to prephenate, notably the only known enzymatically catalyzed, pericyclic reaction in primary metabolism. Structures of the enzyme in, complex with an endo-oxabicyclic transition state analogue inhibitor, previously determined for Bacillus subtilis and Escherichia coli CM, provide structural insight into the enzyme mechanism. In contrast to these, bacterial CMs, yeast CM is allosterically regulated in two ways:, activation by tryptophan and inhibition by tyrosine. Yeast CM exists in, two allosteric states, R (active) and t (inactive). RESULTS: We have, determined crystal structures of wild-type yeast CM cocrystallized with, tryptophan and an endo-oxabicyclic transition state analogue inhibitor, of, wild-type yeast CM co-crystallized with tyrosine and the endo-oxabicyclic, transition state analogue inhibitor and of the Thr226-->Ser mutant of, yeast CM in complex with tryptophan. Binding of the transition state, analogue inhibitor to CM keeps the enzyme in a 'super R' state, even if, the inhibitory effector tyrosine is bound to the regulatory site., CONCLUSIONS: The endo-oxabicyclic inhibitor binds to yeast CM in a similar, way as it does to the distantly related CM from E. coli. The, inhibitor-binding mode supports a mechanism by which polar sidechains of, the enzyme bind the substrate in the pseudo-diaxial conformation, which is, required for catalytic turnover. A lysine and a protonated glutamate, sidechain have a critical role in the stabilization of the transition, state of the pericyclic reaction. The allosteric transition from T-->R, state is accompanied by a 15 degrees rotation of one of the two subunits, relative to the other (where 0 degrees rotation defines the T state). This, rotation causes conformational changes at the dimer interface which are, transmitted to the active site. An allosteric pathway is proposed to, include residues Phe28, Asp24 and Glu23, which move toward the activesite, cavity in the T state. In the presence of the transition-state analogue a, super R state is formed, which is characterised by a 22 degrees rotation, of one subunit relative to the other.
About this StructureAbout this Structure
3CSM is a Single protein structure of sequence from Saccharomyces cerevisiae with and as ligands. Active as Chorismate mutase, with EC number 5.4.99.5 Known structural/functional Sites: , , and . Full crystallographic information is available from OCA.
ReferenceReference
Mechanisms of catalysis and allosteric regulation of yeast chorismate mutase from crystal structures., Strater N, Schnappauf G, Braus G, Lipscomb WN, Structure. 1997 Nov 15;5(11):1437-52. PMID:9384560
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