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===Four lipid binding sites=== | ===Four lipid binding sites=== | ||
CETP's structure reveals a 60 Å long hydrophobic tunnel which traverses the core of the molecule and contains four lipid binding sites: two neutral lipids binding sites in the middle of the tunnel and two phospholipids binding sites (one at each end). The center of the tunnel which is called the “neck” is 10 Å wide and 5 Å high that is large enough to permit the passage of neutral lipid. | CETP's structure reveals a 60 Å long hydrophobic tunnel which traverses the core of the molecule and contains four lipid binding sites: two neutral lipids binding sites in the middle of the tunnel and two phospholipids binding sites (one at each end). The center of the tunnel which is called the “neck” is 10 Å wide and 5 Å high that is large enough to permit the passage of neutral lipid. | ||
Revision as of 14:11, 27 December 2011
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| 2obd, resolution 2.10Å () | |||||||||
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| Ligands: | , , , , , , , | ||||||||
| Gene: | CETP (Homo sapiens) | ||||||||
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| Resources: | FirstGlance, OCA, RCSB, PDBsum | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||
Cholesteryl Ester Transfer Protein is a plasma glycoprotein which is implicated in the transport of cholesteryl esters from the atheroprotective high-density lipoproteins (HDL) to the atherogenic lower-density lipoproteins (LDL). The cristal structure of CETP at 2,2Å resolution in complex with four bound lipid molecules shows a long tunnel traversing the core of the molecule and has two distinct large openings allowing lipids access.
Role of CETPRole of CETP
StructureStructure
General overview of the structureGeneral overview of the structure
CETP is a 476 amino acid residues protein which has an elongated “boomerang shape” with dimensions of 135Å X 30Å X 35Å. She has a molecular mass of 74 kDa and 28% of this mass is attributed to N-glycosylation at specific residues: 88, 240, 341 and 396. She also has a fold which is homologous to BPI (a protein which is implicated in lipid binding): two similar domains are connected by a linker.
CETP's structure can be divided into four structural units:
- At each end of the protein there is a barrel which is constitued of highly twisted β-sheet and two helices called A and B at the N-terminal and A', B' at C-terminal extremity. Helices B and B' are longer than A and A'
- Between the two barrels there is a central β-sheet which is constitued of six antiparallel strands
- At the C-terminal extremity there is a distorted amphiphathic helix called helix X which is an extension of C-teminal interacting with N-terminal residues.
Four lipid binding sitesFour lipid binding sites
CETP's structure reveals a 60 Å long hydrophobic tunnel which traverses the core of the molecule and contains four lipid binding sites: two neutral lipids binding sites in the middle of the tunnel and two phospholipids binding sites (one at each end). The center of the tunnel which is called the “neck” is 10 Å wide and 5 Å high that is large enough to permit the passage of neutral lipid.
A wall of β-sheets underneath the lipids and a layer of helices above the lipids forms the longest tunnel that it exists in lipid-binding and lipid-transfer protein.
Cholesteryl ester 1 (CE1) is situated between the N barrel and the central β-sheet. This binding site is mostly composed of hydrophobic residues and only a few polar. CE1 is too far away from the Ser 230 to establish a hydrogen bond but CE1 can establish some π-starking interaction.
Cholesteryl ester 2 penetrates deeper into the barrel than CE1 and resides between the central β-sheet and the C-barrel. This site contains even fewer polar groups than CE1 binding site. That's why CE2 is not able to make any hydrogen-bonding or π-starking interaction.
The N-opening of the tunnel is 10 Å wide and 5 Å high whereas the C-opening is 13 Å X 5 Å. The C-opening is a little bit larger but both are large enough to allow lipid access. Each opening of the tunnel is plugged by one phospholipid which buries its hydrophobic acyl chain inside the tunnel and its hydrophilic head groups to the solvent.
Helix X and Ω flaps
Some mobile structures located near tunnel openings facilitate the lipid transfer.
The helix X belongs to the C-terminal domain and thanks to its Gly462-Phe463-Pro464 groupment is flexible. It is an amphiphathic helix. The hydrophobic face of helix X interacts with phosphatidylcholine 1 located at the N-terminal in order to form an apolar path allowing the access of neutral lipids to the tunnel. Mutations on the hydrophobic face of helix reduce transfer activities whereas mutations on the polar side do not have any effects on transfer activities. These results prove that helix X plays an important role in transferring neutral lipid from lipoprotein to CETP.
Near the C-opening, there are also two Ω flaps: Ω1 and Ω2. These flaps are linked through the starking interaction between the Phe292 and Ph350. The flap Ω1 interacts with the oleoyl tail of the cholesteryl ester 2 in order to protect the lipid from aqueous solvent exposure. Ω1 also plays an important role.
CETP inhibitionCETP inhibition
External ressourcesExternal ressources
ReferencesReferences
- Qiu X, Mistry A, Ammirati MJ, Chrunyk BA, Clark RW, Cong Y, Culp JS, Danley DE, Freeman TB, Geoghegan KF, Griffor MC, Hawrylik SJ, Hayward CM, Hensley P, Hoth LR, Karam GA, Lira ME, Lloyd DB, McGrath KM, Stutzman-Engwall KJ, Subashi AK, Subashi TA, Thompson JF, Wang IK, Zhao H, Seddon AP. Crystal Structure of cholesteryl ester transfer protein reveals a long tunnel and four bound lipid molecules. Nature Structural & Molecular Biology. 2007 Feb;14(2):106-13. Epub 2007 Jan 21. PMID: 17237796 doi:10.1038/nsmb1197
- James A Hamilton & Richard J Deckelbaum Crystal structure of CETP: new hopes for raising HDL to decrease risk of cardiovascular disease? Nature Structural & Molecular Biology 14, 95 - 97 (2007) PMID: 17277799 doi:10.1038/nsmb0207-95
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BLEU Mélusine, Goepfert Laetitia