2brw: Difference between revisions
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[[Image:2brw.gif|left|200px]]<br /><applet load="2brw" size=" | [[Image:2brw.gif|left|200px]]<br /><applet load="2brw" size="350" color="white" frame="true" align="right" spinBox="true" | ||
caption="2brw, resolution 2.80Å" /> | caption="2brw, resolution 2.80Å" /> | ||
'''CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE FROM 30PERCENT PEGMME.'''<br /> | '''CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE FROM 30PERCENT PEGMME.'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
2BRW is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae] with SO4 as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Hyaluronate_lyase Hyaluronate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.1 4.2.2.1] Known structural/functional Site: <scene name='pdbsite=AC1:So4 Binding Site For Chain B'>AC1</scene>. Full crystallographic information is available from [http:// | 2BRW is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae] with <scene name='pdbligand=SO4:'>SO4</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Hyaluronate_lyase Hyaluronate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.1 4.2.2.1] Known structural/functional Site: <scene name='pdbsite=AC1:So4+Binding+Site+For+Chain+B'>AC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BRW OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: peptidoglycan-anchor]] | [[Category: peptidoglycan-anchor]] | ||
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Revision as of 11:27, 3 February 2008
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CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE FROM 30PERCENT PEGMME.
OverviewOverview
Streptococcus pneumoniae hyaluronan lyase is a surface enzyme of this, Gram-positive bacterium. The enzyme degrades several biologically, important, information-rich linear polymeric glycans: hyaluronan, unsulfated chondroitin, and some chondroitin sulfates. This degradation, facilitates spreading of bacteria throughout the host tissues and, presumably provides energy and a carbon source for pneumococcal cells. Its, beta-elimination catalytic mechanism is an acid/base process termed proton, acceptance and donation leading to cleavage of beta-1,4 linkages of the, substrates. The degradation of hyaluronan occurs in two stages, initial, endolytic cuts are followed by processive exolytic cleavage of one, disaccharide at a time. In contrast, the degradation of chondroitins is, purely endolytic. Structural studies together with flexibility analyses of, two streptococcal enzymes, from S.pneumoniae and Streptococcus agalactiae, allowed for insights into this enzyme's molecular mechanism. Here, two new, X-ray crystal structures of the pneumococcal enzyme in novel conformations, are reported. These new conformations, complemented by molecular dynamics, simulation results, directly confirm the predicted domain motions presumed, to facilitate the processive degradative process. One of these new, structures resembles the S.agalactiae enzyme conformation, and provides, evidence of a uniform mechanistic/dynamic behavior of this protein across, different bacteria.
About this StructureAbout this Structure
2BRW is a Single protein structure of sequence from Streptococcus pneumoniae with as ligand. Active as Hyaluronate lyase, with EC number 4.2.2.1 Known structural/functional Site: . Full crystallographic information is available from OCA.
ReferenceReference
Alternate structural conformations of Streptococcus pneumoniae hyaluronan lyase: insights into enzyme flexibility and underlying molecular mechanism of action., Rigden DJ, Littlejohn JE, Joshi HV, de Groot BL, Jedrzejas MJ, J Mol Biol. 2006 May 12;358(4):1165-78. Epub 2006 Mar 13. PMID:16569416
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