Help:Copying FirstGlance Scenes into Proteopedia: Difference between revisions
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<b>Mac Users:</b> As of March, 2011 (Apple [[Java|Java version]] 1.5.0_28), there are intermittant problems copying and pasting state scripts from the Jmol Console (on Macs only). The only workaround we know is to do the procedure below on a Windows computer. We suspect that this is due to a temporary problem in Apple Java. This message will be removed once the problem is resolved. | <b>Mac Users:</b> As of March, 2011 (Apple [[Java|Java version]] 1.5.0_28), there are intermittant problems copying and pasting state scripts from the Jmol Console (on Macs only). The only workaround we know is to do the procedure below on a Windows computer. We suspect that this is due to a temporary problem in Apple Java. This message will be removed once the problem is resolved. | ||
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This procedure applies to any situation where a website provides tools for obtaining a desired molecular scene in the Jmol applet, that you wish to transfer into Proteopedia. | |||
<applet load='1gpk' size='350' frame='true' align='right' caption="Selected contacts between an anti-Alzheimer`s drug analog and acetylcholinesterase in [[1gpk]]. Scene generated largely and quite easily in [[FirstGlance in Jmol]]. Atoms shown as balls are within non-covalent bonding distances. Use '''popup''' to see details in this scene!" | <applet load='1gpk' size='350' frame='true' align='right' caption="Selected contacts between an anti-Alzheimer`s drug analog and acetylcholinesterase in [[1gpk]]. Scene generated largely and quite easily in [[FirstGlance in Jmol]]. Atoms shown as balls are within non-covalent bonding distances. Use '''popup''' to see details in this scene!" | ||
scene='Help:Copying_FirstGlance_Scenes_into_Proteopedia/Selected_ligand_contacts/4' /> | scene='Help:Copying_FirstGlance_Scenes_into_Proteopedia/Selected_ligand_contacts/4' /> | ||
1. '''Mac users:''' Open the Java Console. This is different from the Jmol Scripting Console. For instructions, please see [http://wiki.jmol.org/index.php/Copying_and_pasting_scripts these instructions]. | |||
1. Obtain the '''desired scene''' in FirstGlance in Jmol. Turn off spinning (even if you want it to spin in Proteopedia), and orient and zoom the molecule as you want it to appear initially. | 1. Obtain the '''desired scene''' in FirstGlance in Jmol. Turn off spinning (even if you want it to spin in Proteopedia), and orient and zoom the molecule as you want it to appear initially. | ||