Turns in Proteins: Difference between revisions
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Seven β-turns are shown as blue traces in myohemerytherin in the scene to the right (<scene name='Turns_in_Proteins/Hemery1/1'>Initial scene</scene>). | Seven β-turns are shown as blue traces in myohemerytherin in the scene to the right (<scene name='Turns_in_Proteins/Hemery1/1'>Initial scene</scene>). | ||
<blockquote>This scene was produced by manually selecting and coloring the turns and forming the hydrogen bonds (hbonds). Jmol 12.0 (As of July 2011 Proteopedia is running in Jmol 11.8.) has a command, [[calculate structure]], which locates the turns by computation and a command, calculate hbonds structure, which displays the hbonds. | <blockquote>This scene was produced by manually selecting and coloring the turns and forming the hydrogen bonds (hbonds). Jmol 12.0 (As of July 2011 Proteopedia is running in Jmol 11.8.) has a command, [[calculate structure]], which locates the turns by computation and a command, calculate hbonds structure, which displays the hbonds. Until ''Protepedia'' is upgraded to ver. 12 any page can be run in the signed ver. 12 by appending "?JMOLJAR=http://chemapps.stolaf.edu/jmol/docs/examples-12/JmolAppletSigned0.jar" to the url of the page and reloading the page. The user must give permission for the signed version of Jmol to open, and when it does it has a red frank, whereas in the unsigned version it is grey. Click on the ''Jmol frank'', in the ''main menu'' click on ''Console'', in the bottom box of the console enter the commands: <center>select protein; calculate structure; cartoon; color structure; calculate hbonds structure</center> and then click ''Run''. | ||
</blockquote> | </blockquote> | ||