User:Eric Martz/Sandbox 13: Difference between revisions
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What I want: | What I want: | ||
# % identity vs. length of each chain and number of identical residues/chain length for each chain | |||
# colors that indicate identity/similarity/difference | |||
# ability to block a region of the alignment and get identity and length for that region (could cut and paste a new job ...) | |||
Jalview: seems to be mostly an alignment ''editing'' tool. | Jalview: seems to be mostly an alignment ''editing'' tool. | ||
EBI Clustal | EBI Clustal | ||
RCSB Compare Structures: Smith-Waterman does #1 but only for sequences of 3D structures. | |||
Revision as of 08:45, 25 May 2011
Sequence Alignment Tools
What I want:
- % identity vs. length of each chain and number of identical residues/chain length for each chain
- colors that indicate identity/similarity/difference
- ability to block a region of the alignment and get identity and length for that region (could cut and paste a new job ...)
Jalview: seems to be mostly an alignment editing tool.
EBI Clustal
RCSB Compare Structures: Smith-Waterman does #1 but only for sequences of 3D structures.