2q0l: Difference between revisions
New page: left|200px<br /><applet load="2q0l" size="450" color="white" frame="true" align="right" spinBox="true" caption="2q0l, resolution 1.450Å" /> '''Helicobacter pylori... |
No edit summary |
||
| Line 1: | Line 1: | ||
[[Image:2q0l.gif|left|200px]]<br /><applet load="2q0l" size=" | [[Image:2q0l.gif|left|200px]]<br /><applet load="2q0l" size="350" color="white" frame="true" align="right" spinBox="true" | ||
caption="2q0l, resolution 1.450Å" /> | caption="2q0l, resolution 1.450Å" /> | ||
'''Helicobacter pylori thioredoxin reductase reduced by sodium dithionite in complex with NADP+'''<br /> | '''Helicobacter pylori thioredoxin reductase reduced by sodium dithionite in complex with NADP+'''<br /> | ||
| Line 7: | Line 7: | ||
==About this Structure== | ==About this Structure== | ||
2Q0L is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori] with FAD and NAP as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] Full crystallographic information is available from [http:// | 2Q0L is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori] with <scene name='pdbligand=FAD:'>FAD</scene> and <scene name='pdbligand=NAP:'>NAP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q0L OCA]. | ||
==Reference== | ==Reference== | ||
| Line 26: | Line 26: | ||
[[Category: reduced izoalloxazine bending]] | [[Category: reduced izoalloxazine bending]] | ||
''Page seeded by [http:// | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 14:41:12 2008'' | ||
Revision as of 15:41, 23 January 2008
|
Helicobacter pylori thioredoxin reductase reduced by sodium dithionite in complex with NADP+
OverviewOverview
The crystal structures of homodimeric thioredoxin reductase (TrxR) from, the gastric pathogen Helicobacter pylori in complex with NADP(+) have been, determined for the oxidized and reduced form of the enzyme at 1.7 and 1.45, A resolution, respectively. The enzyme subunit is built up of FAD- and, NAD(P)H-binding domains, each of which contain variants of the Rossmann, fold typical of nucleotide-binding proteins. The majority of the, amino-acid residues binding the cofactors FAD and NAD(P)H are conserved in, the low-molecular-weight thioredoxin reductases. In the reduced species, the isoalloxazine ring of FAD is bent along an axis passing through the N5, and N10 atoms with an angle of 22 degrees and the ribityl moiety adopts an, unusual conformation. Well defined electron density shows the position of, the whole NADP(+) molecule with a binding mode similar to that observed in, the Escherichia coli TrxR-thioredoxin complex, although the orientation of, the NAD(P)H-binding domain is different. Rigid-body rotation of this, domain to the orientation observed in the E. coli TrxR-thioredoxin complex, positions NADP(+) adjacent to the FAD molecule, suitable for electron, transfer, without any readjustments of the conformation of NADP(+). A, comparison of the binding surfaces of thioredoxin and thioredoxin, reductases from H. pylori and E. coli shows that the overall surface, charge distribution in these proteins is conserved and that residue, substitutions that change the shape of the binding surface may account for, the species-specific recognition of thioredoxin by TrxR.
About this StructureAbout this Structure
2Q0L is a Single protein structure of sequence from Helicobacter pylori with and as ligands. Active as Thioredoxin-disulfide reductase, with EC number 1.8.1.9 Full crystallographic information is available from OCA.
ReferenceReference
High-resolution structures of oxidized and reduced thioredoxin reductase from Helicobacter pylori., Gustafsson TN, Sandalova T, Lu J, Holmgren A, Schneider G, Acta Crystallogr D Biol Crystallogr. 2007 Jul;63(Pt 7):833-43. Epub 2007, Jun 15. PMID:17582174
Page seeded by OCA on Wed Jan 23 14:41:12 2008