Sandbox6 Eric Martz: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

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 ===Homology Model for 83-341===
 <Structure size='450' frame='true' align='right' scene='Sandbox6_Eric_Martz/83-341/1' />
-*Homology model of 83-341 on template chain A of [[3e4c]], 52% sequence identity (<scene name='Sandbox6_Eric_Martz/83-341/1'>restore initial scene</scene>).
+*Homology model of 83-341 on template chain A of [[3e4c]], 52% sequence identity (<scene name='Sandbox6_Eric_Martz/83-341/1'>restore initial scene</scene>). Confidence in this model is high because of the 52% sequence identity and sequence alignment with only one 10-residue gap.
 {{Template:ColorKey_Amino2CarboxyRainbow}}
 *<scene name='Sandbox6_Eric_Martz/83-341/2'>Segment 83-140</scene>.
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 * When the multiple sequence alignment is limited to the 14 type-12 sequences available from Uniprot (APD 0.30), most of the residues have insufficient data, but a <scene name='Sandbox6_Eric_Martz/83-341_conservation/3'>few on the outside face are highly conserved</scene>, namely Asn130, Val135, Val136, Glu139, Asn140. <scene name='Sandbox6_Eric_Martz/83-341_conservation/4'>Hide 141-341</scene>.
-The homology model can be downloaded from [[:Image:Caspase12-homology-model-83-341-on-3e4c-a.pdb|homology-model-83-341]].
+*The homology model can be downloaded from [[:Image:Caspase12-homology-model-83-341-on-3e4c-a.pdb|homology-model-83-341]].
+===Homology Model for 2-88===
 ===Notes===
 <references />