Sandbox6 Eric Martz: Difference between revisions

Revision as of 22:52, 7 February 2011

Please do not edit this page. Eric Martz, February 2011.

Amino Terminus

Carboxy Terminus

.
The seems unremarkable. Bear in mind that sidechain positions are incorrect in a homology model.

Anionic (-) / Cationic (+)

The inner face of 95-140 is . Bear in mind that sidechain positions are incorrect in a homology model. . The distribution of hydrophobic residues in 83-140 of the homology model is similar to that in the .

The inner face of 95-140 is , even based upon a multiple sequence alignment that includes mostly types other than 12^[1] .

When the multiple sequence alignment is limited to the 14 type-12 sequences available from Uniprot (APD 0.30), most of the residues have insufficient data, but a , namely Asn130, Val135, Val136, Glu139, Asn140. .

The homology model can be downloaded from homology-model-83-341.

↑ ConSurf run using 80 sequences from the Uniref-90 sequence database. MSA average pairwise distance (APD) 0.94.

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 <span style="font-size:150%"><font color="red">Please do not edit this page. Eric Martz, February 2011.</font></span>
+===Homology Model for 83-341===
 <Structure size='450' frame='true' align='right' scene='Sandbox6_Eric_Martz/83-341/1' />
 *Homology model of 83-341 on template chain A of [[3e4c]], 52% sequence identity (<scene name='Sandbox6_Eric_Martz/83-341/1'>restore initial scene</scene>).