Thioredoxin: Difference between revisions
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[[Image:1ert.png|left|200px|thumb|Crystal Structure of Thioredoxin [[1ert]]]] | [[Image:1ert.png|left|200px|thumb|Crystal Structure of Thioredoxin [[1ert]]]] | ||
{{STRUCTURE_1ert| PDB=1ert | SIZE=300| SCENE=Thioredoxin/Cv/1 |right|CAPTION=Thioredoxin [[1ert]] }} | {{STRUCTURE_1ert| PDB=1ert | SIZE=300| SCENE=Thioredoxin/Cv/1 |right|CAPTION=Thioredoxin [[1ert]] }} | ||
[[Thioredoxin]] (Trx) is an enzyme which facilitates the reduction of proteins by cysteine thiol-disulfide exchange. They contain a CXXC motif. Trx-1 is a mammalian cellular protein. Trx-2 is mitochondria-specific. In higher plants, Trx are divided to 6 groups based on their sequence. Trx M, X and Y are found in prokaryotes while F, H and O are found in eukaryotes. The images at the left and at the right correspond to one representative Trx, ''i.e.'' the crystal structure of human Thioredoxin ([[1ert]]). | |||
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== 3D Structures of Thioredoxin == | |||
=== Trx === | |||
[[3e3e]], [[2hsh]], [[1aiu]], [[1erv]], [[1erw]] – hTrx (mutant) – human<br /> | |||
[[1cqg]], [[1cqh]] - hTrx (mutant)+Ref-1 peptide – NMR<br /> | |||
[[1mdi]], [[1mdj]], [[1mdk]] - hTrx + Target peptide of NFKB – NMR<br /> | |||
[[2hxk]], [[2ifq]], [[2iiy]] – hTrx S-nitroso<br /> | |||
[[1auc]], [[1ert]], [[1eru]], [[1trs]], [[1tru]], [[1trv]], [[1trw]], [[3trx]], [[4trx]] - hTrx<br /> | |||
[[3hxs]] – BfTrx fragment – ''Bacteroides fragilis''<br /> | |||
[[3hyp]] - BfrxI fragment (mutant)<br /> | |||
[[3hz4]] – Trx – ''Methanosarcina mazei''<br /> | |||
[[2k9f]] - Trx fragment+DsbD N-terminal – ''Neisseria meningitides'' – NMR<br /> | |||
[[3die]] – SaTrx (mutant) – ''Staphylococcus aureus''<br /> | |||
[[2voc]] - BsTrx (mutant) – ''Bacillus subtilis''<br /> | |||
[[2gzy]], [[2gzz]] – BsTrx – NMR<br /> | |||
[[2ipa]] – BsTrx (mutant)+ArcS (mutant) - NMR<br /> | |||
[[2h6x]], [[2trx]], [[1srx]] – EcTrx<br /> | |||
[[1xoa]], [[1xob]] – EcTrx - NMR<br /> | |||
[[1m7t]] – hTrx/EcTrx chimera - NMR<br /> | |||
[[3dxb]] – hTrx+Puf60 C-terminal<br /> | |||
[[3emx]] – Trx – ''Aeropyrum pernix''<br /> | |||
[[2vim]] – Trx – ''Fasciola hepatica''<br /> | |||
[[2yzu]], [[2cvk]], [[1v98]] – TtTrx – ''Thermus thermophilus''<br /> | |||
[[2e0q]] – Trx (mutant) – ''Sulfolobus tokodaii''<br /> | |||
[[2o7k]] – SaTrx<br /> | |||
[[2o85]], [[2o87]], [[2o89]] – SaTrx (mutant)<br /> | |||
[[2i4a]] – Trx – ''Acetobacter aceti''<br /> | |||
[[2j23]] – Trx – ''Malassezia sympodialis''<br /> | |||
[[2f51]] – Trx – ''Trichomonas vaginalis''<br /> | |||
[[1t00]] – Trx – ''Streptomyces coelicolor''<br /> | |||
[[1xw9]], [[1xwa]], [[1xwb]], [[1xwc]] – Trx – ''Drosophila melanogaster''<br /> | |||
[[1rqm]], [[1nsw]], [[1nw2]] – Trx (mutant) – ''Alicyclobacillus acidocaldarius'' – NMR<br /> | |||
[[1syr]] – Trx – ''Plasmodium falciparum''<br /> | |||
[[1r26]] – Trx – ''Trypanosoma brucei brucei''<br /> | |||
[[1gl8]] – Trx – spinach- NMR<br /> | |||
[[1fo5]] – Trx – ''Methanocaldococcus janaschii'' – NMR<br /> | |||
[[1quw]] – Trx – ''Bacillus acidocaldarius'' – NMR | |||
=== Trx-1 === | |||
3f3q, 2i9h – yTrx-1 – yeast | |||
3f3r – yTrx-1 (mutant) | |||
3dyr, 2h6y, 2h6z, 2h70, 2h71, 2h72, 2h73, 2h74, 2h75, 2h76, 2fch, 2fd3, 1keb, 2eio, 2eiq, 2eir, 1zcp, 1zzy, 1txx, 1tho, 1tir – EcTrx-1 (mutant) – Escherichia coli | |||
1f6m – EcTrx-1+Trx reductase+AADP+ | |||
2ajq – EpTrx-1 (mutant)+DNA primer+DNA template+DNA polymerase – Enterobacteria phage T7 | |||
1zyq – EpTrx-1 (mutant)+DNA primer+DNA template+DNA polymerase+ATP | |||
1x9m, 1x9s, 1x9w – EpTrx-1+DNA primer+DNA template+DNA polymerase+N-2-acetylaminofluorene-adducted DNA | |||
1t8e – EpTrx-1 +DNA primer+DNA template+DNA polymerase+dCTP | |||
1tk0 – EpTrx-1+DNA primer+DNA template+DNA polymerase+ddCTP+8-oxo-guanosine | |||
1tk5 - EpTrx-1+DNA primer+DNA template+DNA polymerase+8-oxo-guanosine | |||
1tk8 - EpTrx-1+DNA primer+DNA template+DNA polymerase+dAMP+8-oxo-guanosine | |||
1tkd - EpTrx-1+DNA primer+DNA template+DNA polymerase+dCMP+8-oxo-guanosine | |||
1skr - EpTrx-1+DNA primer+DNA template+DNA polymerase+ddATP | |||
1sks, 1skw, 1sl0, 1sl1, 1sl2 - EpTrx-1+DNA primer+DNA template+DNA polymerase+thymine | |||
1t7p - EpTrx-1+DNA primer+DNA template+DNA polymerase+ddAMP+ddGTP | |||
2bto – Trx-1+tubulin btuba – prosthecobacter dejongeii | |||
1oaz – Trx-1+immunoglobulin E – rat | |||
=== Trx-2 === | |||
1w4v, 1w89, 1uvz – hTrx-2 | |||
3hhv – Trx-2 fragment – Sulfolobus solfataricus | |||
2fa4 – yTrx-2 | |||
2ppt – Trx-2 – Rhodobacter capsulatus | |||
2hsy – yTrx-2 - NMR | |||
1thx – Trx-2 – Anabaena | |||
=== Trx-3 === | |||
2oe0, 2oe1, 2oe3 – yTrx-3 | |||
=== Trx C === | |||
2i1u – Trx C – ''Mycobacterium tuberculosis'' | |||
=== Trx F === | |||
2pu9 – SsTrx F+ferredoxin thioredoxin reductase – Synechocystis | |||
2pvo - SsTrx F+ferredoxin thioredoxin reductase+ferredoxin 1 | |||
1f9m – sTrx F – spinach | |||
1faa - sTrx F (mutant) | |||
=== Trx H === | |||
3d21 – pTrx H – poplar | |||
3d22 - pTrx H (mutant) | |||
1ti3 - pTrx H - NMR | |||
2vlt, 2vlu, 2vlv, 2vm1, 2vm2 - bTrx H – barley | |||
2iwt - bTrx H+alpha-amylase subtilisin inhibitor | |||
1wmj – Trx H – Oryza sativa – NMR | |||
1xfl – Trx H – Arabidopsis thaliana - NMR | |||
1ep7 – CrTrx H – Chlamydomonas reinhardtii | |||
1ep8 - CrTrx H (mutant) | |||
1tof - CrTrx H - NMR | |||
=== Trx M === | |||
2puk - SsTrx M+ferredoxin thioredoxin reductase | |||
1fb0, 1fb6 - sTrx M |