ABC transporter: Difference between revisions
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== 3D Structures of ABC transporter == | == 3D Structures of ABC transporter == | ||
=== ABC amino acids transporters === | |||
[[3g41]] - ABC arginine transporter, soluble domain (mutant) – ''Chlamydia pneumoniae''<br /> | |||
[[3lkb]] - TtABC branched amino acids transporter (mutant)+valine – ''Thermus thermophilus''<br /> | |||
[[3l49]] - ABC ribose transporter – ''Rhodobacter sphaeroides''<br /> | |||
[[3k4u]] - ABC transporter + lysine – ''Wolinella succinogenes''<br /> | |||
[[3i6v]] - SpABC amino acids transporter + lysine – ''Silicibacter pomeroyi''<br /> | |||
[[3h5l]] - SpABC branched-chain amino acids transporter<br /> | |||
[[1g9x]], [[1g6h]], [[1gaj]] - ABC branched-chain amino acids transporter – ''Methanocaldococcus jannaschii''<br /> | |||
[[3i09]] - ABC branched amino acids transporter – ''Burkholderia mallei''<br /> | |||
[[3hv1]] - ABC polar amino acids transporter SBD – ''Streptococcus thermophilus''<br /> | |||
[[3c41]] - GsABC amino acids transporter +AMP-PNP – ''Geobacillus stearothermophilus''<br /> | |||
[[3c4j]] - GsABC amino acids transporter +ATPgS<br /> | |||
[[2pvu]] - GsABC amino acids transporter (mutant)+lysine<br /> | |||
[[2q2a]] - GsABC amino acids transporter (mutant)+arginine<br /> | |||
[[2q2c]] - GsABC amino acids transporter (mutant)+histidine<br /> | |||
[[2olj]] - EcABC amino acid transporter+ADP/Mg – ''Escherichia coli''<br /> | |||
[[2olk]] - EcABC amino acid transporter+ADP-beta-S<br /> | |||
[[2ouk]] - EcABC amino acid transporter+sulfate<br /> | |||
[[2qsw]] - ABC methionine transporter C-terminal – ''Enterococcus faecalis''<br /> | |||
[[2qrr]] - ABC methionine transporter soluble domain – ''Vibrio parahaemolyticus''<br /> | |||
[[3i5o]], [[1vr5]] - TmABC oligopeptides transporter - ''Thermotoga maritime''<br /> | |||
=== ABC sugar transporters === | |||
[[2vk2]] - EcABC galactofuranose transporter +galactofuranose<br /> | |||
[[2w7y]] - SpABC sugar transporter+A-trisaccaride – ''Streptococcus pneumoniae''<br /> | |||
[[2i58]] - SpABC sugar transporter+raffinose<br /> | |||
[[2hq0]], [[2heu]], [[2hfb]] - SpABC sugar transporter<br /> | |||
[[3g1w]] - ABC sugar transporter – ''Bacillus halodurans''<br /> | |||
[[2z8d]] - BlABC lacto-N-biose transporter SBD+lacto-N-biose – ''Bifidobacterium longum''<br /> | |||
[[2z8e]] - BlABC lacto-N-biose transporter SBD+galacto-N-biose<br /> | |||
[[2z8f]] - BlABC lacto-N-biose transporter SBD+lacto-N-tetraose<br /> | |||
[[3c6q]] - TmABC sugar transporter (mutant)+beta-xylopyranose<br /> | |||
[[2yyz]], [[2qvc]], [[2h3h]], [[2hpg]], [[2ghb]] - TmABC sugar transporter<br /> | |||
[[2fn9]] - TmABC sugar transporter (mutant)<br /> | |||
[[2o7i]] - TmABC sugar transporter+cellobiose<br /> | |||
[[2gha]] , [[2fnc]] - TmABC sugar transporter+maltotriose<br /> | |||
[[2fn8]] - TmABC sugar transporter+ribose<br /> | |||
[[1vci]], [[1v43]] - ABC sugar transporter – ''Pyrococcus horikoshii'' | |||
<br /> | |||
[[1oxx]], [[1oxs]], [[1oxt]], [[1oxu]], [[1oxv]] - ABC glucose transporter (mutant) – ''Sulfolobus solfataricus'' | |||
=== ABC metal transporters === | |||
[[3hh8]] - ABC metal transporter – ''Streptococcus pyogenes''<br /> | |||
[[3gfo]] - ABC cobalt transporter – ''Clostridium perfringens''<br /> | |||
[[3lr1]] - ABC tungstate transporter – ''Geobacter sulfurreducens''<br /> | |||
[[3lhs]], [[3li2]] - SaABC OpuAC ferrichrome transporter fragment+Staphyloferrin A - ''Staphylococcus aureus''<br /> | |||
[[3g9q]] - BsABC ferrichrome transporter<br /> | |||
[[3be5]], [[3be6]] - EcABC iron transporter <br /> | |||
[[3d31]] - ABC sulfate/molybdate transporter – ''Methanosarcina acetivorans''<br /> | |||
[[2etv]] - TmABC iron transporter <br /> | |||
[[2ogw]] - EcABC zinc transporter<br /> | |||
[[2ov3]], [[2ov1]], [[1pq4]] - SsABC zinc transporter – ''Synechocystis''<br /> | |||
[[2onk]] - AfABC molybdate/tungstate transporter+Mo/W binding protein – ''Archaeoglobus fulgidus''<br /> | |||
[[2onr]] - AfABC molybdate/tungstate transporter+Mo<br /> | |||
[[2ons]] - AfABC molybdate/tungstate transporter+W<br /> | |||
=== ABC multidrug transporters === | |||
[[2onj]] - SaABC multidrug transporter+AMP-PNP<br /> | |||
[[2hyd]] - SaABC multidrug transporter<br /> | |||
[[1mv5]] - LlABC multidrug transporter ATP binding domain – ''Lactococcus lactis'' | |||
=== ABC choline transporters === | |||
[[3hcq]] - SmABC choline transporter (mutant) – ''Sinorhizobium meliloti''<br /> | |||
[[2rin]] - SmABC choline transporter (mutant)+acetylcholine<br /> | |||
[[2reg]] - SmABC choline transporter (mutant)+choline<br /> | |||
[[2rej]], [[2rf1]] - SmABC choline transporter (mutant)<br /> | |||
=== ABC alpha-hemolysin transporters === | |||
[[2pmk]] - EcABC alpha-hemolysin transporter+TNP-ADP<br /> | |||
[[2ff7]] - EcABC alpha-hemolysin transporter+ADP<br /> | |||
[[2ffa]], [[2ffb]] - EcABC alpha-hemolysin transporter (mutant)+ADP<br /> | |||
[[2fgj]], [[2fgk]], [[2xef]] - EcABC alpha-hemolysin transporter (mutant)+ATP<br /> | |||
[[3b5j]] - EcABC alpha-hemolysin transporter (mutant)+TNP-ADP<br /> | |||
=== ABC various transporters === | |||
[[2v84]] - ABC spermidine/putrescine transporter – ''Treponema pallidum''<br /> | |||
[[2qi9]] - EcABC vitamin B12 transporter+BtuD+BtuF<br /> | |||
[[1l7v]] - EcABC vitamin B12 transporter+BtuD<br /> | |||
[[1twy]] - ABC phosphate transporter – ''Vibrio cholerae''<br /> | |||
[[3l6g]], [[3l6h]] – LlABC OpuAC betaine transporter SBD <br /> | |||
[[2zzv]] - TtABC solute transporter+lactate+Ca<br /> | |||
[[2zzw]] - TtABC solute transporter+lactate+Zn<br /> | |||
[[2zzx]] - TtABC solute transporter+lactate<br /> | |||
[[3gfv]] - BsABC petrobactin transporter – ''Bacillus subtilis'' | |||
=== ABC unspecified transporters === | |||
[[3lvu]] - SpABC transporter SBD <br /> | |||
[[2ihy]] - SaABC transporter ATPase subunit <br /> | |||
[[3eaf]] - ABC transporter SBD – ''Aeropyrum pernix''<br /> | |||
[[3c9h]] - ABC transporter – ''Agrobacterium tumefaciens''<br /> | |||
[[1vpl]], [[1ji0]] - TmABC transporter <br /> | |||
[[2pcj]], [[2pcl]] - ABC transporter – ''Aquifex aeolicus'' | |||
=== CFTR === | |||
[[3gd7]] – hCFTR/malK+N6-phenylethyl-ATP<br /> | |||
[[2pze]], [[2pzf]], [[2pzg]] – hCFTR NBD1<br /> | |||
[[2bbo]], [[2bbs]], [[2bbt]] - hCFTR NBD1 (mutant)<br /> | |||
[[1xmi]], [[2xmj]] - hCFTR NBD1 (mutant)+ATP<br /> | |||
[[1xf9]], [[2xfa]] - mCFTR NBD1 (mutant) - mouse<br /> | |||
[[1q3h]] - mCFTR NBD1+AMPPNP<br /> | |||
[[1r0w]] - mCFTR NBD1<br /> | |||
[[1r0x]], [[1r0z]], [[1r10]] - mCFTR NBD1+ATP<br /> | |||
[[1r0y]] - mCFTR NBD1+ADP<br /> | |||
[[1ckw]], [[1ckx]], [[1cky]], [[1ckz]] – CFTR F508 region - NMR | |||
Revision as of 14:52, 9 December 2010
ATP Binding Cassette (ABC) Transporters are ATP-dependent membrane proteins critical for most aspects of cell physiology, including the uptake of nutrients (importers) and elimination of waste products and energy generation (exporters) which are predominantly expressed in excretory organs, such as the liver, intestine, blood-brain barrier, blood-testes barrier, placenta, and kidney[1][2]. There are many ABC Transporters in organisms, for instance, there are 28 in Saccharomyces,58 in Caenorhabditis, 51 in Drosophila,129 in Arabadopsis,and the 69 ABC transporters in E. coli account for almost 5% of its genomic coding capacity[3]. ABC transporter protein translocates substrates across membranes. It contains a Solute Binding Domain (SBD). CFTR (Cystic Fibrosis Transmembrane Regulator) translocates chloride and thiocyanate. It contains a nucleotide binding domain (NBD). Mutations in CFTR lead to Cystic Fibrosis. The images at the left and at the right correspond to one representative ABC transporter, i.e. the crystal structure of B12 Bacterial ABC Transporter (1l7v).
FunctionFunction
ABC Transporters has two main functionality acting either as exporters or importers. ABC Exporters release bound drugs to the extracellular environment, while ABC Importers accept substrate molecules from their relevant substrate-binding proteins[4]. For instance the Vitamin B12 transporter BtuCD (PDB 1l7v) is a binding protein-dependent ABC transporter system that uses the power of ATP hydrolysis to pump vitamin B12 into the cytoplasm of E. coli[5].
ABC Exporters Use ATP to drive import and export functions providing multidrug resistance. In eukaryoles, for instance, ABC Transporters are problematic because they export therapeutic drugs such as those used in chemotherapy regimens, which must be changed frequently to avoid the rejection of the drugs[4].
To achieve export, ABC transporters require a minimum of four domains. Two transmembrane domains (TMDs) form the ligand binding sites and provide specificity, and two NBDs bind and hydrolyze ATP to drive the trans-location of the bound ligand. The NBDs, but not the TMDs, are homologous throughout the family and have several characteristic motifs including the Walker A and B motifs common to many nucleotide binding proteins and others like the ABC signature, stacking aromatic D, H, and Q loops, which are unique to the family[2].
3D Structures of ABC transporter3D Structures of ABC transporter
ABC amino acids transportersABC amino acids transporters
3g41 - ABC arginine transporter, soluble domain (mutant) – Chlamydia pneumoniae
3lkb - TtABC branched amino acids transporter (mutant)+valine – Thermus thermophilus
3l49 - ABC ribose transporter – Rhodobacter sphaeroides
3k4u - ABC transporter + lysine – Wolinella succinogenes
3i6v - SpABC amino acids transporter + lysine – Silicibacter pomeroyi
3h5l - SpABC branched-chain amino acids transporter
1g9x, 1g6h, 1gaj - ABC branched-chain amino acids transporter – Methanocaldococcus jannaschii
3i09 - ABC branched amino acids transporter – Burkholderia mallei
3hv1 - ABC polar amino acids transporter SBD – Streptococcus thermophilus
3c41 - GsABC amino acids transporter +AMP-PNP – Geobacillus stearothermophilus
3c4j - GsABC amino acids transporter +ATPgS
2pvu - GsABC amino acids transporter (mutant)+lysine
2q2a - GsABC amino acids transporter (mutant)+arginine
2q2c - GsABC amino acids transporter (mutant)+histidine
2olj - EcABC amino acid transporter+ADP/Mg – Escherichia coli
2olk - EcABC amino acid transporter+ADP-beta-S
2ouk - EcABC amino acid transporter+sulfate
2qsw - ABC methionine transporter C-terminal – Enterococcus faecalis
2qrr - ABC methionine transporter soluble domain – Vibrio parahaemolyticus
3i5o, 1vr5 - TmABC oligopeptides transporter - Thermotoga maritime
ABC sugar transportersABC sugar transporters
2vk2 - EcABC galactofuranose transporter +galactofuranose
2w7y - SpABC sugar transporter+A-trisaccaride – Streptococcus pneumoniae
2i58 - SpABC sugar transporter+raffinose
2hq0, 2heu, 2hfb - SpABC sugar transporter
3g1w - ABC sugar transporter – Bacillus halodurans
2z8d - BlABC lacto-N-biose transporter SBD+lacto-N-biose – Bifidobacterium longum
2z8e - BlABC lacto-N-biose transporter SBD+galacto-N-biose
2z8f - BlABC lacto-N-biose transporter SBD+lacto-N-tetraose
3c6q - TmABC sugar transporter (mutant)+beta-xylopyranose
2yyz, 2qvc, 2h3h, 2hpg, 2ghb - TmABC sugar transporter
2fn9 - TmABC sugar transporter (mutant)
2o7i - TmABC sugar transporter+cellobiose
2gha , 2fnc - TmABC sugar transporter+maltotriose
2fn8 - TmABC sugar transporter+ribose
1vci, 1v43 - ABC sugar transporter – Pyrococcus horikoshii
1oxx, 1oxs, 1oxt, 1oxu, 1oxv - ABC glucose transporter (mutant) – Sulfolobus solfataricus
ABC metal transportersABC metal transporters
3hh8 - ABC metal transporter – Streptococcus pyogenes
3gfo - ABC cobalt transporter – Clostridium perfringens
3lr1 - ABC tungstate transporter – Geobacter sulfurreducens
3lhs, 3li2 - SaABC OpuAC ferrichrome transporter fragment+Staphyloferrin A - Staphylococcus aureus
3g9q - BsABC ferrichrome transporter
3be5, 3be6 - EcABC iron transporter
3d31 - ABC sulfate/molybdate transporter – Methanosarcina acetivorans
2etv - TmABC iron transporter
2ogw - EcABC zinc transporter
2ov3, 2ov1, 1pq4 - SsABC zinc transporter – Synechocystis
2onk - AfABC molybdate/tungstate transporter+Mo/W binding protein – Archaeoglobus fulgidus
2onr - AfABC molybdate/tungstate transporter+Mo
2ons - AfABC molybdate/tungstate transporter+W
ABC multidrug transportersABC multidrug transporters
2onj - SaABC multidrug transporter+AMP-PNP
2hyd - SaABC multidrug transporter
1mv5 - LlABC multidrug transporter ATP binding domain – Lactococcus lactis
ABC choline transportersABC choline transporters
3hcq - SmABC choline transporter (mutant) – Sinorhizobium meliloti
2rin - SmABC choline transporter (mutant)+acetylcholine
2reg - SmABC choline transporter (mutant)+choline
2rej, 2rf1 - SmABC choline transporter (mutant)
ABC alpha-hemolysin transportersABC alpha-hemolysin transporters
2pmk - EcABC alpha-hemolysin transporter+TNP-ADP
2ff7 - EcABC alpha-hemolysin transporter+ADP
2ffa, 2ffb - EcABC alpha-hemolysin transporter (mutant)+ADP
2fgj, 2fgk, 2xef - EcABC alpha-hemolysin transporter (mutant)+ATP
3b5j - EcABC alpha-hemolysin transporter (mutant)+TNP-ADP
ABC various transportersABC various transporters
2v84 - ABC spermidine/putrescine transporter – Treponema pallidum
2qi9 - EcABC vitamin B12 transporter+BtuD+BtuF
1l7v - EcABC vitamin B12 transporter+BtuD
1twy - ABC phosphate transporter – Vibrio cholerae
3l6g, 3l6h – LlABC OpuAC betaine transporter SBD
2zzv - TtABC solute transporter+lactate+Ca
2zzw - TtABC solute transporter+lactate+Zn
2zzx - TtABC solute transporter+lactate
3gfv - BsABC petrobactin transporter – Bacillus subtilis
ABC unspecified transportersABC unspecified transporters
3lvu - SpABC transporter SBD
2ihy - SaABC transporter ATPase subunit
3eaf - ABC transporter SBD – Aeropyrum pernix
3c9h - ABC transporter – Agrobacterium tumefaciens
1vpl, 1ji0 - TmABC transporter
2pcj, 2pcl - ABC transporter – Aquifex aeolicus
CFTRCFTR
3gd7 – hCFTR/malK+N6-phenylethyl-ATP
2pze, 2pzf, 2pzg – hCFTR NBD1
2bbo, 2bbs, 2bbt - hCFTR NBD1 (mutant)
1xmi, 2xmj - hCFTR NBD1 (mutant)+ATP
1xf9, 2xfa - mCFTR NBD1 (mutant) - mouse
1q3h - mCFTR NBD1+AMPPNP
1r0w - mCFTR NBD1
1r0x, 1r0z, 1r10 - mCFTR NBD1+ATP
1r0y - mCFTR NBD1+ADP
1ckw, 1ckx, 1cky, 1ckz – CFTR F508 region - NMR
ReferencesReferences
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