User:Wayne Decatur/Homology Modeling: Difference between revisions
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*[http://modbase.compbio.ucsf.edu/modbase-cgi/index.cgi ModBase: Database of Comparative Protein Structure Models] also allows users to calculate comparative models on demand. | *[http://modbase.compbio.ucsf.edu/modbase-cgi/index.cgi ModBase: Database of Comparative Protein Structure Models] also allows users to calculate comparative models on demand. | ||
*[http://salilab.org/modeller/ Modeller] | *[http://salilab.org/modeller/ Modeller] | ||
*[http://spdbv.vital-it.ch/TheMolecularLevel/Matics/index.html Gale Rhodes Homology modeling tutorial using Swiss PDB | *[http://spdbv.vital-it.ch/TheMolecularLevel/Matics/index.html Gale Rhodes Homology modeling tutorial using Swiss PDB Viewer (DeepView)] | ||
*[http://www.yasara.org/homologymodeling.htm Yasara to homology model] | *[http://www.yasara.org/homologymodeling.htm Yasara to homology model] | ||
*[http://www.ncbi.nlm.nih.gov/pubmed/17640066 The Homology Modeling Automatically (HOMA) web site] | *[http://www.ncbi.nlm.nih.gov/pubmed/17640066 The Homology Modeling Automatically (HOMA) web site] | ||
*[http://www.yasara.org/ YASARA] - Yet Another Scientific Artificial Reality Application) features a complete homology modeling module that fully automatically takes all the steps from an amino acid sequence to a refined high-resolution model using a CASP approved protocol. | |||
Revision as of 21:03, 9 November 2010
- Homology modeling page at Proteopedia
- Eric Martz's Homology modeling of DnaC
- SwissModel
- Swiss-PdbViewer is tightly linked to SWISS-MODEL, an automated homology modeling server developed within the Swiss Institute of Bioinformatics (SIB) at the Structural Bioinformatics Group at... Swiss-PdbViewer is tightly linked to SWISS-MODEL, an automated homology modeling server developed within the Swiss Institute of Bioinformatics (SIB) at the Structural Bioinformatics Group at the Biozentrum in Basel.
- David Bevan's homology modeling page
- Course on Homology Modeling
- Class on Homology Modeling
- Biskit that uses python for homology modeling
- note on Pymol for homology modeling
- ModBase: Database of Comparative Protein Structure Models also allows users to calculate comparative models on demand.
- Modeller
- Gale Rhodes Homology modeling tutorial using Swiss PDB Viewer (DeepView)
- Yasara to homology model
- The Homology Modeling Automatically (HOMA) web site
- YASARA - Yet Another Scientific Artificial Reality Application) features a complete homology modeling module that fully automatically takes all the steps from an amino acid sequence to a refined high-resolution model using a CASP approved protocol.
See AlsoSee Also
- Homology model
- Molecular modeling and visualization software
- List of software for molecular mechanics modeling at Wikipeida although thoroughness and how current it is are subject to question by the inclusion of RasMol which is simply a viewer with no modeling abilities that has been supplanted by better viewers such as Chime and Jmol not included on the list.