Jmol: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Eric Martz, Wayne Decatur, Jaime Prilusky, Angel Herraez, Joel L. Sussman

Revision as of 21:58, 2 September 2010 view source Wayne Decatur (talk \| contribs) Editor, widgeteditor 7,596 edits mNo edit summary ← Older edit		Revision as of 22:03, 2 September 2010 view source Wayne Decatur (talk \| contribs) Editor, widgeteditor 7,596 edits mNo edit summary Newer edit →
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	Jmol<ref>Jmol was initiated before 2000 by [http://openscience.org Dan Gezelter], and many programmers contributed to it including Bradley A. Smith, Egon Willighagen, and Cristoph Steinbeck. In 2002, Miguel Howard volunteered as the primary developer. He made many major enhancements including drastically improved performance, support for macromolecules, and implementation of the [[RasMol]] / [[Chime]] script command language. Howard's work culminated in the release of an open-source replacement for [[Chime]] in 2006. Subsequently, [http://www.stolaf.edu/people/hansonr/ Robert M. Hanson] became lead developer, and has vastly enhanced Jmol's capabilities. For more, see [http://jmol.sourceforge.net/history/ History of Jmol Development].</ref><ref>Biomolecules in the computer: Jmol to the rescue. Angel Herráez,[http://www3.interscience.wiley.com/journal/113449000/abstract ''Biochem. Mol. Biol. Ed.'' '''34''':255-61, 2006].</ref><ref>~~doi:~~10.1107/S0021889810030256~~</ref><ref>doi:10.1007/s00775-010-0694-2~~</ref><ref>[http://wiki.jmol.org:81/index.php/Literature Jmol Literature] at the Jmol.Org wiki.</ref> is a free, open-source [[Molecular modeling and visualization software\|molecular visualization]] software package. Its [http://en.wikipedia.org/wiki/Applet applet] is the primary visualization software used in Proteopedia. Jmol is a [http://en.wikipedia.org/wiki/Cross-platform cross-platform] program written in [http://en.wikipedia.org/wiki/Java_(programming_language) java], and is available either as a stand-alone application, or as a web browser applet.		Jmol<ref>Jmol was initiated before 2000 by [http://openscience.org Dan Gezelter], and many programmers contributed to it including Bradley A. Smith, Egon Willighagen, and Cristoph Steinbeck. In 2002, Miguel Howard volunteered as the primary developer. He made many major enhancements including drastically improved performance, support for macromolecules, and implementation of the [[RasMol]] / [[Chime]] script command language. Howard's work culminated in the release of an open-source replacement for [[Chime]] in 2006. Subsequently, [http://www.stolaf.edu/people/hansonr/ Robert M. Hanson] became lead developer, and has vastly enhanced Jmol's capabilities. For more, see [http://jmol.sourceforge.net/history/ History of Jmol Development].</ref><ref>Biomolecules in the computer: Jmol to the rescue. Angel Herráez,[http://www3.interscience.wiley.com/journal/113449000/abstract ''Biochem. Mol. Biol. Ed.'' '''34''':255-61, 2006].</ref><ref>DOI 10.1107/S0021889810030256</ref><ref>[http://wiki.jmol.org:81/index.php/Literature Jmol Literature] at the Jmol.Org wiki.</ref> is a free, open-source [[Molecular modeling and visualization software\|molecular visualization]] software package. Its [http://en.wikipedia.org/wiki/Applet applet] is the primary visualization software used in Proteopedia. Jmol is a [http://en.wikipedia.org/wiki/Cross-platform cross-platform] program written in [http://en.wikipedia.org/wiki/Java_(programming_language) java], and is available either as a stand-alone application, or as a web browser applet.

	The Jmol applet is also used in [[Molecular Workbench]] and in [[#Use in Scientific Journals\|scientific journals]].		The Jmol applet is also used in [[Molecular Workbench]] and in [[#Use in Scientific Journals\|scientific journals]].