1b08: Difference between revisions
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[[Image:1b08.gif|left|200px]]<br /> | [[Image:1b08.gif|left|200px]]<br /><applet load="1b08" size="450" color="white" frame="true" align="right" spinBox="true" | ||
<applet load="1b08" size="450" color="white" frame="true" align="right" spinBox="true" | |||
caption="1b08, resolution 2.300Å" /> | caption="1b08, resolution 2.300Å" /> | ||
'''LUNG SURFACTANT PROTEIN D (SP-D) (FRAGMENT)'''<br /> | '''LUNG SURFACTANT PROTEIN D (SP-D) (FRAGMENT)'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
1B08 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with CA as [http://en.wikipedia.org/wiki/ligand ligand]. | 1B08 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with CA as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Sites: <scene name='pdbsite=CR1:Carbohydrate Binding Ca Ion'>CR1</scene>, <scene name='pdbsite=CR2:Carbohydrate Binding Ca Ion'>CR2</scene> and <scene name='pdbsite=CR3:Carbohydrate Binding Ca Ion'>CR3</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1B08 OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: sp-d]] | [[Category: sp-d]] | ||
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Dec 18 14:24:22 2007'' | ||
Revision as of 15:14, 18 December 2007
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LUNG SURFACTANT PROTEIN D (SP-D) (FRAGMENT)
OverviewOverview
BACKGROUND: Human lung surfactant protein D (hSP-D) belongs to the, collectin family of C-type lectins and participates in the innate immune, surveillance against microorganisms in the lung through recognition of, carbohydrate ligands present on the surface of pathogens. The involvement, of this protein in innate immunity and the allergic response make it the, subject of much interest. RESULTS: We have determined the crystal, structure of a trimeric fragment of hSP-D at 2.3 A resolution. The, structure comprises an alpha-helical coiled-coil and three, carbohydrate-recognition domains (CRDs). An interesting deviation from, symmetry was found in the projection of a single tyrosine sidechain into, the centre of the coiled-coil; the asymmetry of this residue influences, the orientation of one of the adjacent CRDs. The cleft between the three, CRDs presents a large positively charged surface. CONCLUSIONS: The fold of, the CRD of hSP-D is similar to that of the mannan-binding protein (MBP), but its orientation relative to the alpha-helical coiled-coil region, differs somewhat to that seen in the MBP structure. The novel central, packing of the tyrosine sidechain within the coiled-coil and the resulting, asymmetric orientation of the CRDs has unexpected functional implications., The positively charged surface might facilitate binding to negatively, charged structures, such as lipopolysaccharides.
About this StructureAbout this Structure
1B08 is a Single protein structure of sequence from Homo sapiens with CA as ligand. Known structural/functional Sites: , and . Full crystallographic information is available from OCA.
ReferenceReference
Crystal structure of the trimeric alpha-helical coiled-coil and the three lectin domains of human lung surfactant protein D., Hakansson K, Lim NK, Hoppe HJ, Reid KB, Structure. 1999 Mar 15;7(3):255-64. PMID:10368295
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