Jmol: Difference between revisions
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'''Interactive 3D figures.''' Following the lead set by [[Kinemages, Mage and KiNG|Kinemages in the early 1990's]], figures in scientific journal articles have been implemented in Jmol so they can be rotated, etc. Probably the first instance was | '''Interactive 3D figures.''' Following the lead set by [[Kinemages, Mage and KiNG|Kinemages in the early 1990's]], figures in scientific journal articles have been implemented in Jmol so they can be rotated, etc. This involves manual implementation of each figure, a laborious task requiring a person knowledgeable in Jmol programming. Probably the first instance was in November, 2006, in [http://pubs.acs.org/journal/acbcct ACS Chemical Biology], and subsequently in June, 2007, in [http://biochemj.org Biochemical Journal] with interactive 3D figures in Jmol implemented by Frieda Reichsman. Authoring of these interactive 3D figures remains time consuming, and only about a dozen articles have been so illustrated as of early 2010 (listed at Reichsman's site [http://moleculesinmotion.com MoleculesInMotion.Com]). In 2009, [http://www.proteinscience.org/view/0/editorMessage.html Protein Science followed suit]<ref>A. G. Palmer and B. W. Matthews, [http://www.proteinscience.org/details/journalArticle/174315/Interactive_graphics_return_to_protein_science.html Interactive graphics return to protein science], Protein Science 18:677 (2009).</ref> | ||
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'''[[FirstGlance in Jmol]]''' is used by several journals for interactive 3D display and exploration of newly published macromolecular structures. Typically, a link labeled ''3D View'' appears in the online journal articles and contents. The first journal to do this was [http://nature.com/nsmb Nature Structural and Molecular Biology] in February, 2006, and others, including [http://nature.com/nature Nature], soon followed -- see [http://firstglance.jmol.org/adoption.htm Adoptions]. | '''[[FirstGlance in Jmol]]''' is used by several journals for interactive 3D display and exploration of newly published macromolecular structures. Typically, a link labeled ''3D View'' appears in the online journal articles and contents. The first journal to do this was [http://nature.com/nsmb Nature Structural and Molecular Biology] in February, 2006, and others, including [http://nature.com/nature Nature], soon followed -- see [http://firstglance.jmol.org/adoption.htm Adoptions]. | ||