User:Adam Meade/Sandbox 1: Difference between revisions
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'''Properties of Irr''' | '''Chemical and Physical Properties of Irr''' | ||
Molecular weight: 18338.8 | ***Make into a table*** | ||
Amino Acid Composition: | |||
Ala (A) 15 9.2% | |||
Arg (R) 10 6.1% | |||
Asn (N) 6 3.7% | |||
Asp (D) 10 6.1% | |||
Cys (C) 1 0.6% | |||
Gln (Q) 5 3.1% | |||
Glu (E) 11 6.7% | |||
Gly (G) 9 5.5% | |||
His (H) 10 6.1% | |||
Ile (I) 3 1.8% | |||
Leu (L) 21 12.9% | |||
Lys (K) 6 3.7% | |||
Met (M) 6 3.7% | |||
Phe (F) 2 1.2% | |||
Pro (P) 8 4.9% | |||
Ser (S) 7 4.3% | |||
Thr (T) 13 8.0% | |||
Trp (W) 2 1.2% | |||
Tyr (Y) 6 3.7% | |||
Val (V) 12 7.4% | |||
Pyl (O) 0 0.0% | |||
Sec (U) 0 0.0% | |||
Molecular weight: 18338.8 Da | |||
Theoretical pI: 6.03 | Theoretical pI: 6.03 | ||
'''Evolution of Irr/Fur''' | |||
Go to top 5 on Rasmol, put in amino acid sequence and find domain conservations, anything related to Irr/Fur in the past (conserf) | |||
'''Structure of the Proposed Irr Protein'''<applet load='Irr.pdb' size='300' color='black' frame='true' align='right' caption='3D Image of proposed Irr protein'/> | '''Structure of the Proposed Irr Protein'''<applet load='Irr.pdb' size='300' color='black' frame='true' align='right' caption='3D Image of proposed Irr protein'/> | ||
Go to polyview 3d, select "secondary structures" for coloring mode and re-upload | |||
The amino acid sequence used to derive the structure shown is as follows: | The amino acid sequence used to derive the structure shown is as follows: | ||