Sandbox2 Eric Martz: Difference between revisions
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When I specified 136 as the maximum number of sequences to be used (based on the examination of the "PSI-BLAST output" in job [http://consurf.tau.ac.il/results/1237421568/output.html 1237421568]), I expected the most distant sequence used to be the 136th in the list, namely "sp|P15979|HA1F_CHICK Class I histocompatibility antigen, F10 alp...". However, the next two sequences (Q9GL43, Q9GL42) were included in the list "Unique Sequences Used", which did include exactly 136 sequences. This I do not understand. | When I specified 136 as the maximum number of sequences to be used (based on the examination of the "PSI-BLAST output" in job [http://consurf.tau.ac.il/results/1237421568/output.html 1237421568]), I expected the most distant sequence used to be the 136th in the list, namely "sp|P15979|HA1F_CHICK Class I histocompatibility antigen, F10 alp...". However, the next two sequences (Q9GL43, Q9GL42) were included in the list "Unique Sequences Used", which did include exactly 136 sequences. This I do not understand. | ||
==Conservation Grade Distribution for 2VAA:A== | |||
Here are the distributions of conservation grades for 2VAA:A using different total numbers of sequences in the multiple sequence alignment. | |||
==References== | ==References== | ||
<references /> | <references /> | ||