2glp: Difference between revisions
New page: left|200px<br /><applet load="2glp" size="450" color="white" frame="true" align="right" spinBox="true" caption="2glp, resolution 2.420Å" /> '''Crystal structure o... |
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[[Image:2glp.jpg|left|200px]]<br /><applet load="2glp" size=" | [[Image:2glp.jpg|left|200px]]<br /><applet load="2glp" size="350" color="white" frame="true" align="right" spinBox="true" | ||
caption="2glp, resolution 2.420Å" /> | caption="2glp, resolution 2.420Å" /> | ||
'''Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(FabZ) from Helicobacter pylori complexed with compound 1'''<br /> | '''Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(FabZ) from Helicobacter pylori complexed with compound 1'''<br /> | ||
==Overview== | |||
ss-hydroxyacyl-ACP dehydratase (FabZ) is an important enzyme for the, elongation cycles of fatty acids biosyntheses in the type-II fatty acid, biosynthesis system (FAS II) pathway. FabZ has been an essential target, for the discovery of compounds effective against pathogenic microbes. In, this work, to characterize the catalytic and inhibitory mechanisms of, FabZ, the crystal structures of the FabZ of Helicobacter pylori (HpFabZ), and its complexes with two newly discovered inhibitors have been solved., Different from the structures of other bacterial FabZs, HpFabZ contains an, extra short two-turn a-helix (a4), which plays an important role in, shaping the substrate-binding tunnel. Residue Tyr100 at the entrance of, the tunnel adopts either an open or closed conformation in the crystal, structure. The crystal structural characterization, the binding affinity, determination and the enzymatic activity assay of the HpFabZ mutant, (Y100A) confirm the importance of Tyr100 in catalytic activity and, substrate binding. Residue Phe83 at the exit tunnel was also refined in, two alternative conformations, leading the tunnel to form L-shape and, U-shape. All these data thus contributed a lot to understanding the, catalytic mechanism of HpFabZ. In addition, the co-crystal structures of, HpFabZ with its inhibitors have suggested that the enzymatic activity of, HpFabZ could be inhibited either by occupying the entrance of the tunnel, or plugging the tunnel to prevent the substrate from accessing the active, site. Our study is expected to have provided some insights into the, catalytic and inhibitory mechanisms of FabZ thus facilitating the, antibacterial agent development. | |||
==About this Structure== | ==About this Structure== | ||
2GLP is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori] with CL, BEN and BDE as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http:// | 2GLP is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori] with <scene name='pdbligand=CL:'>CL</scene>, <scene name='pdbligand=BEN:'>BEN</scene> and <scene name='pdbligand=BDE:'>BDE</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GLP OCA]. | ||
==Reference== | |||
Structural basis for catalytic and inhibitory mechanisms of beta -hydroxyacyl-acyl carrier protein dehydratase (FabZ)., Zhang L, Liu W, Hu T, Du L, Luo C, Chen K, Shen X, Jiang H, J Biol Chem. 2007 Dec 19;. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18093984 18093984] | |||
[[Category: Helicobacter pylori]] | [[Category: Helicobacter pylori]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: CL]] | [[Category: CL]] | ||
[[Category: fabz complex]] | [[Category: fabz complex]] | ||
[[Category: lyase]] | |||
''Page seeded by [http:// | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 11:12:40 2008'' | ||
Revision as of 12:12, 23 January 2008
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Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(FabZ) from Helicobacter pylori complexed with compound 1
OverviewOverview
ss-hydroxyacyl-ACP dehydratase (FabZ) is an important enzyme for the, elongation cycles of fatty acids biosyntheses in the type-II fatty acid, biosynthesis system (FAS II) pathway. FabZ has been an essential target, for the discovery of compounds effective against pathogenic microbes. In, this work, to characterize the catalytic and inhibitory mechanisms of, FabZ, the crystal structures of the FabZ of Helicobacter pylori (HpFabZ), and its complexes with two newly discovered inhibitors have been solved., Different from the structures of other bacterial FabZs, HpFabZ contains an, extra short two-turn a-helix (a4), which plays an important role in, shaping the substrate-binding tunnel. Residue Tyr100 at the entrance of, the tunnel adopts either an open or closed conformation in the crystal, structure. The crystal structural characterization, the binding affinity, determination and the enzymatic activity assay of the HpFabZ mutant, (Y100A) confirm the importance of Tyr100 in catalytic activity and, substrate binding. Residue Phe83 at the exit tunnel was also refined in, two alternative conformations, leading the tunnel to form L-shape and, U-shape. All these data thus contributed a lot to understanding the, catalytic mechanism of HpFabZ. In addition, the co-crystal structures of, HpFabZ with its inhibitors have suggested that the enzymatic activity of, HpFabZ could be inhibited either by occupying the entrance of the tunnel, or plugging the tunnel to prevent the substrate from accessing the active, site. Our study is expected to have provided some insights into the, catalytic and inhibitory mechanisms of FabZ thus facilitating the, antibacterial agent development.
About this StructureAbout this Structure
2GLP is a Single protein structure of sequence from Helicobacter pylori with , and as ligands. Full crystallographic information is available from OCA.
ReferenceReference
Structural basis for catalytic and inhibitory mechanisms of beta -hydroxyacyl-acyl carrier protein dehydratase (FabZ)., Zhang L, Liu W, Hu T, Du L, Luo C, Chen K, Shen X, Jiang H, J Biol Chem. 2007 Dec 19;. PMID:18093984
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