Proteopedia:Problems: Difference between revisions
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'''Namespace lists:''' ''PARTIALLY SOLVED, see [[Proteopedia:Namespaces]] but the links don't work.'' Need a way to list namespaces, and pages within each namespace. For example, see [http://en.wikipedia.org/wiki/Wikipedia:Namespace Wikipedia: Namespace]. Perhaps this should be an item on the the left, similar to "Special Pages". I see no way to list the pages within a namespace (to find out what they are). The "Special pages" do not seem to include such lists. If I use the checkboxes on the search results page to limit a search to the Proteopedia namespace, and search for "proteopedia", I get 4 hits (Troubleshooting, Policy, Wishlist, Problems). But there may be other pages in this namespace that don't explicitly mention the query term, which therefore will not appear on the search results list. Namespaces are rather important for authors to know about. That is why I think a way to list these pages is a high priority. [[User:Emartz|Emartz]] 17:36, 28 February 2008 (IST) | '''Namespace lists:''' ''PARTIALLY SOLVED, see [[Proteopedia:Namespaces]] but the links don't work.'' Need a way to list namespaces, and pages within each namespace. For example, see [http://en.wikipedia.org/wiki/Wikipedia:Namespace Wikipedia: Namespace]. Perhaps this should be an item on the the left, similar to "Special Pages". I see no way to list the pages within a namespace (to find out what they are). The "Special pages" do not seem to include such lists. If I use the checkboxes on the search results page to limit a search to the Proteopedia namespace, and search for "proteopedia", I get 4 hits (Troubleshooting, Policy, Wishlist, Problems). But there may be other pages in this namespace that don't explicitly mention the query term, which therefore will not appear on the search results list. Namespaces are rather important for authors to know about. That is why I think a way to list these pages is a high priority. [[User:Emartz|Emartz]] 17:36, 28 February 2008 (IST) | ||
On page [[1c96]], the ligand FLC (fluorocitrate?) is shown while, if you click on its green link, it's really a citrate. I don't know of other instances but I'll now look for them. --[[User:Ralf Stephan|Ralf Stephan]] 19:22, 15 February 2009 (IST) | <span style="background-color:yellow;color:green">'''SOLVED'''</span> ''On page [[1c96]], the ligand FLC (fluorocitrate?) is shown while, if you click on its green link, it's really a citrate. I don't know of other instances but I'll now look for them. --[[User:Ralf Stephan|Ralf Stephan]] 19:22, 15 February 2009 (IST) | ||
Ligand green links are generated from the PDB file. I checked the PDB file, and what is being displayed matches the PDB file. If this is really an error then please notify the PDB. They can fix the file, and we will update the page accordingly. --[[User:Eran Hodis|Eran Hodis]] 20:40, 15 February 2009 (IST) | |||
This is not really a problem. PDB (RCSB) is not required to name ligands and short molecules following any known nomenclature. In the structure file for 1c96 you may find this line ''HETNAM FLC CITRATE ANION''. Other interesting example can be found in structure 1yuh, using Np, the official symbol for Neptunium to indicate 3-nitropropanoic acid. [[User:Jaime_Prilusky|Jaime Prilusky]] Sun Feb 15 22:01:33 IST 2009 | |||
== Problems that can be fixed after widespread use begins== | == Problems that can be fixed after widespread use begins== | ||