User:Wayne Decatur/SandboxTeachingInfo: Difference between revisions
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== | ==Proteopedia and Authoring Pages for your Projects== | ||
===Introduction=== | ===Introduction=== | ||
*[http://en.wikipedia.org/wiki/Lac_repressor Lac Repressor at Wikipedia] | *[http://en.wikipedia.org/wiki/Lac_repressor Lac Repressor at Wikipedia] | ||
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*[[User:Wayne Decatur/Plant Viral Protein p19 Suppression of RNA Silencing]] is another example if a protected user subpage. | *[[User:Wayne Decatur/Plant Viral Protein p19 Suppression of RNA Silencing]] is another example if a protected user subpage. | ||
*[[Help:Protected Pages]] tells how to create protected as subpages of your user page. | *[[Help:Protected Pages]] tells how to create protected as subpages of your user page. | ||
===Authoring pages=== | |||
*[[Proteopedia:Video Guide|Movies Showing How to Author Proteopedia Pages]] | *[[Proteopedia:Video Guide|Movies Showing How to Author Proteopedia Pages]] | ||
*[[Help:Editing]] | *[[Help:Editing]] | ||
===Authoring scenes within pages=== | |||
*[[Scene authoring tools|Molecular Scene Authoring Tools]] | *[[Scene authoring tools|Molecular Scene Authoring Tools]] | ||
*[[User:Tom Gluick/glutamine synthetase]] (University of Maryland, Baltimore County). Includes instructions for using Jmol commands in the Jmol console for advanced scene authoring. | *[[User:Tom Gluick/glutamine synthetase]] (University of Maryland, Baltimore County). Includes instructions for using Jmol commands in the Jmol console for advanced scene authoring. | ||
===Advanced Scene Authoring=== | |||
*[http://www.bioinformatics.org/jmol-tutorials/jtat/_docs/jtatdocs.htm#scripting Scripting molecular views directions as found a Jmol Tutorial Authoring Tools] talks about the variations you can use to get your desired scene; see the next entry as well. | *[http://www.bioinformatics.org/jmol-tutorials/jtat/_docs/jtatdocs.htm#scripting Scripting molecular views directions as found a Jmol Tutorial Authoring Tools] talks about the variations you can use to get your desired scene; see the next entry as well. | ||
*[http://www.bioinformatics.org/jmol-tutorials/jtat/_docs/jtatdocs.htm#fgijscripting Scripting in FirstGlance in Jmol directions as found a Jmol Tutorial Authoring Tools (JTAT)] also has more information on going from scenes generated in FirstGlance in Jmol to a state script and this approach can be adapted to going from FirstGlance in Jmol scenes to Proteopedia scenes, the important point being to be use consistent version of Jmol. | *[http://www.bioinformatics.org/jmol-tutorials/jtat/_docs/jtatdocs.htm#fgijscripting Scripting in FirstGlance in Jmol directions as found a Jmol Tutorial Authoring Tools (JTAT)] also has more information on going from scenes generated in FirstGlance in Jmol to a state script and this approach can be adapted to going from FirstGlance in Jmol scenes to Proteopedia scenes, the important point being to be use consistent version of Jmol. | ||
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<br> | <br> | ||
'''SAVE OFTEN!'''<br> | '''SAVE OFTEN!'''<br> | ||
===Advanced Jmol=== | |||
*[http://chemapps.stolaf.edu/jmol/docs/ Jmol interactive scripting documentation] | *[http://chemapps.stolaf.edu/jmol/docs/ Jmol interactive scripting documentation] | ||
===Advanced Jmol=== | |||
*[[Teaching Scenes, Tutorials, and Educators%27 Pages]] | *[[Teaching Scenes, Tutorials, and Educators%27 Pages]] | ||
*[[Student Projects]] | |||