1sh4: Difference between revisions

Revision as of 16:01, 21 February 2008

Solution structure of oxidized bovine microsomal cytochrome B5 Mutant V45H

OverviewOverview

A comparative study on the solution structures of bovine microsomal cytochrome b5 (Tb5) and the mutant V45H has been achieved by 1D and 2D 1H-NMR spectroscopy to clarify the differences in the solution conformations between these two proteins. The results reveal that the global folding of the V45H mutant in solution is unchanged, but the subtle changes exist in the orientation of the axial ligand His39, and heme vinyl groups. The side chain of His45 in V45H mutant extends to the outer edge of the heme pocket leaving a cavity at the site originally occupied by the inner methyl group of Val45 residue. In addition, the imidazole ring of axial ligand His39 rotates counterclockwise by approximately 3 degrees around the His-Fe-His axis, and the 4-heme vinyl group turns to the space vacated by the removed side chain due to the mutation. Furthermore, the helix III of the heme pocket undergoes outward displacement, while the linkage between helix II and III is shifted leftward. These observations are not only consistent with the pattern of the pseudocontact shifts of the heme protons, but also well account for the lower stability of V45H mutant against heat and urea.

About this StructureAbout this Structure

1SH4 is a Single protein structure of sequence from Bos taurus with as ligand. Full crystallographic information is available from OCA.

ReferenceReference

The comparative study on the solution structures of the oxidized bovine microsomal cytochrome b5 and mutant V45H., Zhang Q, Cao C, Wang ZQ, Wang YH, Wu H, Huang ZX, Protein Sci. 2004 Aug;13(8):2161-9. PMID:15273310

Page seeded by OCA on Thu Feb 21 15:01:26 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1sh4.gif|left|200px]]<br /><applet load="1sh4" size="450" color="white" frame="true" align="right" spinBox="true"
+[[Image:1sh4.gif|left|200px]]<br /><applet load="1sh4" size="350" color="white" frame="true" align="right" spinBox="true"
 caption="1sh4" />
 '''Solution structure of oxidized bovine microsomal cytochrome B5 Mutant V45H'''<br />
 ==Overview==
-A comparative study on the solution structures of bovine microsomal, cytochrome b5 (Tb5) and the mutant V45H has been achieved by 1D and 2D, 1H-NMR spectroscopy to clarify the differences in the solution, conformations between these two proteins. The results reveal that the, global folding of the V45H mutant in solution is unchanged, but the subtle, changes exist in the orientation of the axial ligand His39, and heme vinyl, groups. The side chain of His45 in V45H mutant extends to the outer edge, of the heme pocket leaving a cavity at the site originally occupied by the, inner methyl group of Val45 residue. In addition, the imidazole ring of, axial ligand His39 rotates counterclockwise by approximately 3 degrees, around the His-Fe-His axis, and the 4-heme vinyl group turns to the space, vacated by the removed side chain due to the mutation. Furthermore, the, helix III of the heme pocket undergoes outward displacement, while the, linkage between helix II and III is shifted leftward. These observations, are not only consistent with the pattern of the pseudocontact shifts of, the heme protons, but also well account for the lower stability of V45H, mutant against heat and urea.
+A comparative study on the solution structures of bovine microsomal cytochrome b5 (Tb5) and the mutant V45H has been achieved by 1D and 2D 1H-NMR spectroscopy to clarify the differences in the solution conformations between these two proteins. The results reveal that the global folding of the V45H mutant in solution is unchanged, but the subtle changes exist in the orientation of the axial ligand His39, and heme vinyl groups. The side chain of His45 in V45H mutant extends to the outer edge of the heme pocket leaving a cavity at the site originally occupied by the inner methyl group of Val45 residue. In addition, the imidazole ring of axial ligand His39 rotates counterclockwise by approximately 3 degrees around the His-Fe-His axis, and the 4-heme vinyl group turns to the space vacated by the removed side chain due to the mutation. Furthermore, the helix III of the heme pocket undergoes outward displacement, while the linkage between helix II and III is shifted leftward. These observations are not only consistent with the pattern of the pseudocontact shifts of the heme protons, but also well account for the lower stability of V45H mutant against heat and urea.
 ==About this Structure==
-SH4 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus] with HEM as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1SH4 OCA].
+SH4 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus] with <scene name='pdbligand=HEM:'>HEM</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SH4 OCA].
 ==Reference==
@@ Line 20: / Line 20: @@
 [[Category: heme ring]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 02:23:03 2007''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:01:26 2008''