User:Eric Martz/Cavities tests: Difference between revisions

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-<applet load='2hu4_1.pdb' size='500' frame='true' align='right' caption='Influenza Neuraminidase N1 (2hu4).' scene='Avian_Influenza_Neuraminidase,_Tamiflu_and_Relenza/2hu4_tetramer/1' />
+<applet load='Dnac_from_2ggz_a.pdb' size='500' frame='true' align='right' caption=''  />
-I am using biological unit 1 of 2hu4, a homotetramer.
-Here is a scene <scene name='Avian_Influenza_Neuraminidase,_Tamiflu_and_Relenza/2hu4_for_cavity/1'>showing only chain A</scene>.
-In the SAT, I open the console and enter these comands to generate a cavity surface:
-  select :a
-  isosurface cavsurf minset 250 POCKET cavity 1.2 5
-The cavity displays correctly. However, when I save and try to replay the <scene name='Avian_Influenza_Neuraminidase,_Tamiflu_and_Relenza/2hu4_for_cavity/2'>cavity scene</scene>, the script error shown below Jmol occurs.
-{{Clear}}
-<pre>
-script compiler ERROR: unrecognized expression token: )
-----line 200 command 22 of /wiki/scripts/Avian_Influenza_Neuraminidase,_Tamiflu_and_Relenza/2hu4_for_cavity/2.spt:
-         calculate surfaceDistance WITHIN ({0:2961}) ; <<<<
-----line 1 command 2 of  file null:
-         script >> "/wiki/scripts/Avian_Influenza_Neuraminidase,_Tamiflu_and_Relenza/2hu4_for_cavity/2.spt" <<
-</pre>

Revision as of 23:10, 2 October 2008