1iin: Difference between revisions

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'''thymidylyltransferase complexed with UDP-glucose'''<br />
'''thymidylyltransferase complexed with UDP-glucose'''<br />


==Overview==
==Overview==
Metabolite glycosylation is affected by three classes of enzymes:, nucleotidylyltransferases, which activate sugars as nucleotide, diphospho-derivatives, intermediate sugar-modifying enzymes and, glycosyltransferases, which transfer the final derivatized activated, sugars to aglycon substrates. One of the first crystal structures of an, enzyme responsible for the first step in this cascade, alpha-D-glucopyranosyl phosphate thymidylyltransferase (Ep) from, Salmonella, in complex with product (UDP-Glc) and substrate (dTTP) is, reported at 2.0 A and 2.1 A resolution, respectively. These structures, in, conjunction with the kinetic characterization of Ep, clarify the catalytic, mechanism of this important enzyme class. Structure-based engineering of, Ep produced modified enzymes capable of utilizing 'unnatural' sugar, phosphates not accepted by wild type Ep. The demonstrated ability to alter, nucleotidylyltransferase specificity by design is an integral component of, in vitro glycosylation systems developed for the production of diverse, glycorandomized libraries.
Metabolite glycosylation is affected by three classes of enzymes: nucleotidylyltransferases, which activate sugars as nucleotide diphospho-derivatives, intermediate sugar-modifying enzymes and glycosyltransferases, which transfer the final derivatized activated sugars to aglycon substrates. One of the first crystal structures of an enzyme responsible for the first step in this cascade, alpha-D-glucopyranosyl phosphate thymidylyltransferase (Ep) from Salmonella, in complex with product (UDP-Glc) and substrate (dTTP) is reported at 2.0 A and 2.1 A resolution, respectively. These structures, in conjunction with the kinetic characterization of Ep, clarify the catalytic mechanism of this important enzyme class. Structure-based engineering of Ep produced modified enzymes capable of utilizing 'unnatural' sugar phosphates not accepted by wild type Ep. The demonstrated ability to alter nucleotidylyltransferase specificity by design is an integral component of in vitro glycosylation systems developed for the production of diverse glycorandomized libraries.


==About this Structure==
==About this Structure==
1IIN is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica Salmonella enterica] with UPG as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Glucose-1-phosphate_thymidylyltransferase Glucose-1-phosphate thymidylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.24 2.7.7.24] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1IIN OCA].  
1IIN is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica Salmonella enterica] with <scene name='pdbligand=UPG:'>UPG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Glucose-1-phosphate_thymidylyltransferase Glucose-1-phosphate thymidylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.24 2.7.7.24] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IIN OCA].  


==Reference==
==Reference==
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[[Category: Salmonella enterica]]
[[Category: Salmonella enterica]]
[[Category: Single protein]]
[[Category: Single protein]]
[[Category: Barton, W.A.]]
[[Category: Barton, W A.]]
[[Category: Biggins, J.B.]]
[[Category: Biggins, J B.]]
[[Category: Jeffrey, P.D.]]
[[Category: Jeffrey, P D.]]
[[Category: Jiang, J.]]
[[Category: Jiang, J.]]
[[Category: Lesniak, J.]]
[[Category: Lesniak, J.]]
[[Category: Nikolov, D.B.]]
[[Category: Nikolov, D B.]]
[[Category: Rajashankar, K.R.]]
[[Category: Rajashankar, K R.]]
[[Category: Thorson, J.S.]]
[[Category: Thorson, J S.]]
[[Category: UPG]]
[[Category: UPG]]
[[Category: transferase]]
[[Category: transferase]]


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