NMR Ensembles of Models: Difference between revisions
Eric Martz (talk | contribs) →Display of NMR Models by Proteopedia: adding content |
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{{ColorKey N2CRainbow}} | {{ColorKey N2CRainbow}} | ||
Ligands ([[Hetero atoms]]) are also shown for all models, except that they are opaque only for model 1, and translucent for all other models. Ligand atoms are colored by element, using the [[CPK color scheme]]. Examples with hetero groups covalently linked to chain termini, with extremely variable positions, are [[1jsa]] and [[1dqc]]. | Ligands ([[Hetero atoms]]) are also shown for all models, except that they are opaque only for model 1, and translucent for all other models. Ligand atoms are colored by element, using the [[CPK color scheme]]. Examples with hetero groups covalently linked to chain termini, with extremely variable positions, are [[1jsa]] and [[1dqc]]. [[1bah]] also has hetero groups in variable positions. | ||
The example at right shows the 3 models for [[1lcd]], a lac repressor domain bound to DNA, with one sodium ion. Water is present in this model but for clarity, Proteopedia does not show water in its initial scene. | The example at right shows the 3 models for [[1lcd]], a lac repressor domain bound to DNA, with one sodium ion. Water is present in this model, but for clarity, Proteopedia does not show water in its initial scene. | ||
Disulfide bonds are shown as yellow rods connecting backbones, for example in [[1iw4]], with the first model opaque, and all other models translucent. | Disulfide bonds are shown as yellow rods connecting backbones, for example in [[1iw4]], with the first model opaque, and all other models translucent. | ||