NMR Ensembles of Models: Difference between revisions
Eric Martz (talk | contribs) →Animating NMR Ensembles: polishing |
Eric Martz (talk | contribs) →Display of NMR Models by Proteopedia: using new template for color key |
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Proteopedia shows '''all the models''' in ensembles of models from NMR experiments. This enables you to see where the models agree with each other, and where they differ. Each model is shown as a thin backbone trace (a line connecting alpha carbon atoms of amino acids, or phosphorus atoms in DNA or RNA chains). The backbone traces are colored by <font color="blue">'''Amino'''</font> to <font color="red">'''Carboxy'''</font> "rainbow", a spectral sequence of colors starting at the amino terminus (or 5' terminus of nucleic acid chains) and ending at the carboxy terminus (or 3' terminus). | Proteopedia shows '''all the models''' in ensembles of models from NMR experiments. This enables you to see where the models agree with each other, and where they differ. Each model is shown as a thin backbone trace (a line connecting alpha carbon atoms of amino acids, or phosphorus atoms in DNA or RNA chains). The backbone traces are colored by <font color="blue">'''Amino'''</font> to <font color="red">'''Carboxy'''</font> "rainbow", a spectral sequence of colors starting at the amino terminus (or 5' terminus of nucleic acid chains) and ending at the carboxy terminus (or 3' terminus). | ||
{{ColorKey N2CRainbow}} | |||
Ligands ([[Hetero atoms]]) are also shown for all models, except that they are opaque only for model 1, and translucent for all other models. Ligand atoms are colored by element, using the [[CPK color scheme]]. | Ligands ([[Hetero atoms]]) are also shown for all models, except that they are opaque only for model 1, and translucent for all other models. Ligand atoms are colored by element, using the [[CPK color scheme]]. | ||