2qcc: Difference between revisions

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{{STRUCTURE_2qcc|  PDB=2qcc  |  SCENE=  }}  
{{STRUCTURE_2qcc|  PDB=2qcc  |  SCENE=  }}  


'''Crystal structure of the orotidine-5'-monophosphate decarboxylase domain of human UMP synthase, apo form'''
===Crystal structure of the orotidine-5'-monophosphate decarboxylase domain of human UMP synthase, apo form===




==Overview==
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UMP synthase (UMPS) catalyzes the last two steps of de novo pyrimidine nucleotide synthesis and is a potential cancer drug target. The C-terminal domain of UMPS is orotidine-5'-monophosphate decarboxylase (OMPD), a cofactor-less yet extremely efficient enzyme. Studies of OMPDs from micro-organisms led to the proposal of several noncovalent decarboxylation mechanisms via high-energy intermediates. We describe nine crystal structures of human OMPD in complex with substrate, product, and nucleotide inhibitors. Unexpectedly, simple compounds can replace the natural nucleotides and induce a closed conformation of OMPD, defining a tripartite catalytic site. The structures outline the requirements drugs must meet to maximize therapeutic effects and minimize cross-species activity. Chemical mimicry by iodide identified a CO(2) product binding site. Plasticity of catalytic residues and a covalent OMPD-UMP complex prompt a reevaluation of the prevailing decarboxylation mechanism in favor of covalent intermediates. This mechanism can also explain the observed catalytic promiscuity of OMPD.
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==Disease==
==Disease==
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[[Category: Tim barrel]]
[[Category: Tim barrel]]
[[Category: Ump synthase]]
[[Category: Ump synthase]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 14:43:09 2008''
 
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Revision as of 20:31, 28 July 2008

File:2qcc.png

Template:STRUCTURE 2qcc

Crystal structure of the orotidine-5'-monophosphate decarboxylase domain of human UMP synthase, apo formCrystal structure of the orotidine-5'-monophosphate decarboxylase domain of human UMP synthase, apo form

Template:ABSTRACT PUBMED 18184586

DiseaseDisease

Known disease associated with this structure: Oroticaciduria OMIM:[258900]

About this StructureAbout this Structure

2QCC is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

ReferenceReference

Structures of the human orotidine-5'-monophosphate decarboxylase support a covalent mechanism and provide a framework for drug design., Wittmann JG, Heinrich D, Gasow K, Frey A, Diederichsen U, Rudolph MG, Structure. 2008 Jan;16(1):82-92. PMID:18184586

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