1prc: Difference between revisions
New page: left|200px<br /> <applet load="1prc" size="450" color="white" frame="true" align="right" spinBox="true" caption="1prc, resolution 2.3Å" /> '''CRYSTALLOGRAPHIC REF... |
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'''CRYSTALLOGRAPHIC REFINEMENT AT 2.3 ANGSTROMS RESOLUTION AND REFINED MODEL OF THE PHOTOSYNTHETIC REACTION CENTER FROM RHODOPSEUDOMONAS VIRIDIS'''<br /> | '''CRYSTALLOGRAPHIC REFINEMENT AT 2.3 ANGSTROMS RESOLUTION AND REFINED MODEL OF THE PHOTOSYNTHETIC REACTION CENTER FROM RHODOPSEUDOMONAS VIRIDIS'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
1PRC is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Blastochloris_viridis Blastochloris viridis] with FE, SO4, FOR, BCB, BPB, MQ7, HEM, NS1, UQ1 and LDA as [http://en.wikipedia.org/wiki/ligands ligands]. The following page contains interesting information on the relation of 1PRC with [[http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb22_1.html Photosystem I]]. Full crystallographic information is available from [http:// | 1PRC is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Blastochloris_viridis Blastochloris viridis] with <scene name='pdbligand=FE:'>FE</scene>, <scene name='pdbligand=SO4:'>SO4</scene>, <scene name='pdbligand=FOR:'>FOR</scene>, <scene name='pdbligand=BCB:'>BCB</scene>, <scene name='pdbligand=BPB:'>BPB</scene>, <scene name='pdbligand=MQ7:'>MQ7</scene>, <scene name='pdbligand=HEM:'>HEM</scene>, <scene name='pdbligand=NS1:'>NS1</scene>, <scene name='pdbligand=UQ1:'>UQ1</scene> and <scene name='pdbligand=LDA:'>LDA</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. The following page contains interesting information on the relation of 1PRC with [[http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb22_1.html Photosystem I]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PRC OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: photosynthetic reaction center]] | [[Category: photosynthetic reaction center]] | ||
''Page seeded by [http:// | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Feb 15 16:41:06 2008'' | ||
Revision as of 17:41, 15 February 2008
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CRYSTALLOGRAPHIC REFINEMENT AT 2.3 ANGSTROMS RESOLUTION AND REFINED MODEL OF THE PHOTOSYNTHETIC REACTION CENTER FROM RHODOPSEUDOMONAS VIRIDIS
OverviewOverview
The atomic model of the photosynthetic reaction centre from the purple, bacterium Rhodopseudomonas viridis has been refined to an R-value of 0.193, at 2.3 A resolution. The refined model contains 10,288 non-hydrogen atoms;, 10,045 of these have well defined electron density. A Luzzati-plot, indicates an average co-ordinate error of 0.26 A. During refinement, the, positions of a partially ordered carotenoid, a unibiquinone in the, partially occupied QB site, a detergent molecule, seven putative sulphate, ions, and 201 water molecules were found. More than half of these waters, are bound at interfaces between protein subunits and therefore contribute, significantly to subunit interactions. Water molecules also play important, structural and probably functional roles in the environment of some of the, cofactors. Two water molecules form hydrogen bonds to the accessory, bacteriochlorophylls and to the protein in the vicinity of the special, pair of bacteriophylls, the primary electron donor. A group of about 10, water molecules is bound near the binding site of the secondary quinone, QB. These waters are likely to participate in the transfer of protons to, the doubly reduced QB.
About this StructureAbout this Structure
1PRC is a Protein complex structure of sequences from Blastochloris viridis with , , , , , , , , and as ligands. The following page contains interesting information on the relation of 1PRC with [Photosystem I]. Full crystallographic information is available from OCA.
ReferenceReference
Crystallographic refinement at 2.3 A resolution and refined model of the photosynthetic reaction centre from Rhodopseudomonas viridis., Deisenhofer J, Epp O, Sinning I, Michel H, J Mol Biol. 1995 Feb 24;246(3):429-57. PMID:7877166
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