2bcu: Difference between revisions

Revision as of 14:36, 27 July 2008

This article has been automatically seeded. Changes to this page should pertain to the PDB entry only and not to the protein or biomolecule in general.

File:2bcu.png

Template:STRUCTURE 2bcu

DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp and a T:T mismatchDNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp and a T:T mismatch

Template:ABSTRACT PUBMED 16439207

About this StructureAbout this Structure

2BCU is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

ReferenceReference

Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase., Garcia-Diaz M, Bebenek K, Krahn JM, Pedersen LC, Kunkel TA, Cell. 2006 Jan 27;124(2):331-42. PMID:16439207

Page seeded by OCA on Sun Jul 27 14:36:06 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2bcu.gif|left|200px]]
+{{Seed}}
+[[Image:2bcu.png|left|200px]]
 <!--
@@ Line 9: / Line 10: @@
 {{STRUCTURE_2bcu|  PDB=2bcu  |  SCENE=  }}
-'''DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp and a T:T mismatch'''
+===DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp and a T:T mismatch===
-==Overview==
+<!--
-Insertions and deletions in coding sequences can alter the reading frame of genes and have profound biological consequences. In 1966, Streisinger proposed that these mutations result from strand slippage, which in repetitive sequences generates misaligned intermediates stabilized by correct base pairing that support polymerization. We report here crystal structures of human DNA polymerase lambda, which frequently generates deletion mutations, bound to such intermediates. Each contains an extrahelical template nucleotide upstream of the active site. Surprisingly, the extra nucleotide, even when combined with an adjacent mismatch, does not perturb polymerase active site geometry, which is indistinguishable from that for correctly aligned strands. These structures reveal how pol lambda can polymerize on substrates with minimal homology during repair of double-strand breaks and represent strand-slippage intermediates consistent with Streisinger's classical hypothesis. They are thus relevant to the origin of single-base deletions, a class of mutations that can confer strong biological phenotypes.
+The line below this paragraph, {{ABSTRACT_PUBMED_16439207}}, adds the Publication Abstract to the page
+(as it appears on PubMed at http://www.pubmed.gov), where 16439207 is the PubMed ID number.
+-->
+{{ABSTRACT_PUBMED_16439207}}
 ==About this Structure==
@@ Line 34: / Line 38: @@
 [[Category: Slippage]]
 [[Category: Streisinger]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 20:07:21 2008''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 14:36:06 2008''