Believe It or Not!: Difference between revisions
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'''The most common ...''' | '''The most common ...''' | ||
* The most common Sources are [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606 Homo sapiens], present in 43, | * The most common Sources are [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606 Homo sapiens], present in 43,291 PDB structures and [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=562 Escherichia coli], present in 10,226 PDB structures. | ||
* The most common Ligand is '''GOL''', present in 23, | * The most common Ligand is '''GOL''', present in 23,093 PDB structures (excluding SO4) | ||
* The most common Space group is '''P 21 21''', present in 32,728 PDB structures. | * The most common Space group is '''P 21 21''', present in 32,728 PDB structures. | ||
'''The most conspicuous ...''' | '''The most conspicuous ...''' | ||
* The least popular experiment type is Solution Scattering used on 3 structures ([[1ntj]], [[1ntl]], [[1r70]]) over 226, | * The least popular experiment type is Solution Scattering used on 3 structures ([[1ntj]], [[1ntl]], [[1r70]]) over 226,709 ( 0.00%) | ||
* The most popular experiment type is X-ray Diffraction used on 188, | * The most popular experiment type is X-ray Diffraction used on 188,687 structures over 226,709 (83.23%) | ||
* The structures with the most biomolecules are [[2zzs]], [[4dx9]] with 32 each and [[5lhy]] with 30. | * The structures with the most biomolecules are [[2zzs]], [[4dx9]] with 32 each and [[5lhy]] with 30. | ||
* The PDB structure with the most models is [[2hyn]], with 184 models. | * The PDB structure with the most models is [[2hyn]], with 184 models. | ||
* The PDB structures with the most related structures are [[ | * The PDB structures with the most related structures are [[4b1t]], [[4b2b]], [[4b2c]] with 287 related structures each. | ||
* The PDB structure with the most chains is [[4v99]] with 480 chains. | * The PDB structure with the most chains is [[4v99]] with 480 chains. | ||
* The PDB structures with the longest chain are [[4v5x]], [[4v5x]] with 7,249 amino acids (alpha carbons only) each. | * The PDB structures with the longest chain are [[4v5x]], [[4v5x]] with 7,249 amino acids (alpha carbons only) each. | ||
* The PDB structures with the shortest chain (greater than one residue) are [[1b2m]], [[1cwp]], [[1d53]], [[1ddl]], [[1dn8]], [[1ehl]], [[1f0v]], [[1i8m]], [[1ijs]], [[1kqs]], [[1lgc]], [[1m6a]], [[1n38]], [[1oup]], [[1pv4]], [[1pvo]], [[1q81]], [[1q82]], [[1rnb]], [[1vy6]], [[1xam]], [[279d]], [[2d7g]], [[2dwl]], [[2dwm]], [[2dwn]], [[2ht1]], [[2htt]], [[2ok0]], [[2pjr]], [[2vrt]], [[3er9]], [[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]], [[3j5l]], [[3j9m]], [[3ngz]], [[3nma]], [[3ra4]], [[3ra9]], [[3rec | * The PDB structures with the shortest chain (greater than one residue) are [[1b2m]], [[1cwp]], [[1d53]], [[1ddl]], [[1dn8]], [[1ehl]], [[1f0v]], [[1i8m]], [[1ijs]], [[1kqs]], [[1lgc]], [[1m6a]], [[1n38]], [[1oup]], [[1pv4]], [[1pvo]], [[1q81]], [[1q82]], [[1rnb]], [[1vy6]], [[1xam]], [[279d]], [[2d7g]], [[2dwl]], [[2dwm]], [[2dwn]], [[2ht1]], [[2htt]], [[2ok0]], [[2pjr]], [[2vrt]], [[3er9]], [[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]], [[3j5l]], [[3j9m]], [[3ngz]], [[3nma]], [[3ra4]], [[3ra9]], [[3rec]], [[3u2e]], [[3ucu]], [[3ucz]], [[3ud3]], [[3ud4]], [[3va0]], [[4a3g]], [[4a3j]], [[4a8k]], [[4afy]], [[4dy8]], [[4e60]], [[4ejt]], [[4g7o]], [[4jzu]], [[4jzv]], [[4lq3]], [[4nia]], [[4nku]], [[4ohy]], [[4oi0]], [[4oi1]], [[4oq8]], [[4oq9]], [[4pei]], [[4tzd]], [[4wti]], [[4wtj]], [[4wtk]], [[4wtl]], [[4wtm]], [[4x4n]], [[4x4r]], [[4x4t]], [[4x4t]], [[4x4u]], [[5f6c]], [[5jju]], [[5k77]], [[5kal]], [[5mmi]], [[5tgm]], [[5uh6]], [[5uh9]] with 2 residues each. | ||
* The PDB structure with the most amino acids is [[3jb9]] with 39,298 amino acids (alpha carbons only). | * The PDB structure with the most amino acids is [[3jb9]] with 39,298 amino acids (alpha carbons only). | ||
* The PDB structure with the largest number ALTLOC is [[1zir]] with 22 alternate location. | * The PDB structure with the largest number ALTLOC is [[1zir]] with 22 alternate location. | ||
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* The PDB structures with the most ligands are [[3wu2]], [[5b5e]], [[5b66]], [[5h2f]], [[5ws6]] with 21 ligands each. | * The PDB structures with the most ligands are [[3wu2]], [[5b5e]], [[5b66]], [[5h2f]], [[5ws6]] with 21 ligands each. | ||
* The PDB structures with the largest number of distinct chemical elements are [[3cpw]], [[3l4p]], [[3ow2]], [[5t5i]], [[5t61]] with 12 elements each. | * The PDB structures with the largest number of distinct chemical elements are [[3cpw]], [[3l4p]], [[3ow2]], [[5t5i]], [[5t61]] with 12 elements each. | ||
* The 10 most popular Chemical Elements, excluding C,O,S,P,H,Na,Cl,K are Zinc (Zn) on 12, | * The 10 most popular Chemical Elements, excluding C,O,S,P,H,Na,Cl,K are Zinc (Zn) on 12,541 PDB, Magnesium (Mg) on 12,082 PDB, Calcium (Ca) on 9,289 PDB, Selenium (Se) on 8,360 PDB, Iron (Fe) on 7,528 PDB, Fluorine (F) on 4,343 PDB, Manganese (Mn) on 2,860 PDB, Bromine (Br) on 1,458 PDB, Nickel (Ni) on 1,405 PDB and Copper (Cu) on 1,353 PDB. | ||
* The most exotic Chemical Elements are Americium (Am [[4zhg]]), Bismuth (Bi [[4h0w]]), Californium (Cf [[5kic]]), Curium (Cm [[4zhf]]), Dysprosium (Dy [[4ll7]]), Neon (Ne [[2axt]]), Plutonium (Pu [[4zhd]]), Scandium (Sc [[3zi4]]), Titanium (Ti [[5dyh]]) found in one PDB structure each. | * The most exotic Chemical Elements are Americium (Am [[4zhg]]), Bismuth (Bi [[4h0w]]), Californium (Cf [[5kic]]), Curium (Cm [[4zhf]]), Dysprosium (Dy [[4ll7]]), Neon (Ne [[2axt]]), Plutonium (Pu [[4zhd]]), Scandium (Sc [[3zi4]]), Titanium (Ti [[5dyh]]) found in one PDB structure each. | ||
* The PDB structure with the largest file is [[4pth]] with 25,711,441 bytes (compressed). | * The PDB structure with the largest file is [[4pth]] with 25,711,441 bytes (compressed). | ||
* The PDB structure with the smallest file is [[3rec]] with 2,938 bytes (compressed). | * The PDB structure with the smallest file is [[3rec]] with 2,938 bytes (compressed). | ||
* The PDB structures with the most sources are [[2wsc]], [[2wse]] and [[2wsf]] with 6 sources each. | * The PDB structures with the most sources are [[2wsc]], [[2wse]] and [[2wsf]] with 6 sources each. | ||
*There are 1, | *There are 1,545 sources that occur in only a single entry. See [[Structures with Exotic Sources]] | ||
'''Determination methods ...''' | '''Determination methods ...''' | ||
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* The PDB structures solved with '''X-ray Diffraction''' with the '''best resolution''' are [[3nir]], [[5d8v]] with 0.48 Å each. | * The PDB structures solved with '''X-ray Diffraction''' with the '''best resolution''' are [[3nir]], [[5d8v]] with 0.48 Å each. | ||
* The '''mean resolution''' for PDB structures solved with '''Electron Crystallography''' is 2.72 ± 2.92 based on 238 structures | * The '''mean resolution''' for PDB structures solved with '''Electron Crystallography''' is 2.72 ± 2.92 based on 238 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Electron Microscopy''' is 4.05 ± 3. | * The '''mean resolution''' for PDB structures solved with '''Electron Microscopy''' is 4.05 ± 3.19 based on 22,929 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Fiber Diffraction''' is 3.37 ± 0.7 based on 37 structures | * The '''mean resolution''' for PDB structures solved with '''Fiber Diffraction''' is 3.37 ± 0.7 based on 37 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Neutron Diffraction''' is 1.93 ± 0.35 based on 82 structures | * The '''mean resolution''' for PDB structures solved with '''Neutron Diffraction''' is 1.93 ± 0.35 based on 82 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Powder Diffraction''' is 2.96 ± 0.35 based on 7 structures | * The '''mean resolution''' for PDB structures solved with '''Powder Diffraction''' is 2.96 ± 0.35 based on 7 structures | ||
* The '''mean resolution''' for PDB structures solved with '''Solution Scattering''' is 30 ± 0 based on 3 structures | * The '''mean resolution''' for PDB structures solved with '''Solution Scattering''' is 30 ± 0 based on 3 structures | ||
* The '''mean resolution''' for PDB structures solved with '''X-ray Diffraction''' is 2.12 ± 0.59 based on 188, | * The '''mean resolution''' for PDB structures solved with '''X-ray Diffraction''' is 2.12 ± 0.59 based on 188,687 structures | ||
* The PDB structure solved with '''Electron Crystallography''' with the '''worst resolution''' is [[2dfs]] with 24.0 Å. | * The PDB structure solved with '''Electron Crystallography''' with the '''worst resolution''' is [[2dfs]] with 24.0 Å. | ||
* The PDB structures solved with '''Electron Microscopy''' with the '''worst resolution''' are [[1m8q]], [[1mvw]], [[1o18]], [[1o19]], [[1o1a]], [[1o1b]], [[1o1c]], [[1o1d]], [[1o1e]], [[1o1f]], [[1o1g]] with 70.0 Å each. | * The PDB structures solved with '''Electron Microscopy''' with the '''worst resolution''' are [[1m8q]], [[1mvw]], [[1o18]], [[1o19]], [[1o1a]], [[1o1b]], [[1o1c]], [[1o1d]], [[1o1e]], [[1o1f]], [[1o1g]] with 70.0 Å each. | ||
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'''Overall Statistics ...''' | '''Overall Statistics ...''' | ||
* The mean PDB file is 188. | * The mean PDB file is 188.83K ± 328.3K based on 129,452 files. | ||
* There are 4 structure files with 12 citations ([[1dtq]],[[1dtt]],[[1het]],[[3u87]]) and 5 structure files with 10 citations ([[1cc4]],[[1cc6]],[[1cj2]],[[1cj3]],[[1cj4]]). | * There are 4 structure files with 12 citations ([[1dtq]],[[1dtt]],[[1het]],[[3u87]]) and 5 structure files with 10 citations ([[1cc4]],[[1cc6]],[[1cj2]],[[1cj3]],[[1cj4]]). | ||
''Updated by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct | ''Updated by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 30 15:05:00 2024'' | ||
==Notes== | ==Notes== | ||
*[[4tst]] is a useful PDB id for a non-existing structure *Search for this page with the word '''BelieveItOrNot''' -- all the words in the real title "Believe It Or Not!" are so common that they are ignored by the search index mechanism (see [[Help:Stop Words]]), so you will not succeed searching for the real title. This page is also linked to the [[Main Page]]. | *[[4tst]] is a useful PDB id for a non-existing structure *Search for this page with the word '''BelieveItOrNot''' -- all the words in the real title "Believe It Or Not!" are so common that they are ignored by the search index mechanism (see [[Help:Stop Words]]), so you will not succeed searching for the real title. This page is also linked to the [[Main Page]]. | ||