1q3f: Difference between revisions
New page: left|200px<br /> <applet load="1q3f" size="450" color="white" frame="true" align="right" spinBox="true" caption="1q3f, resolution 1.9Å" /> '''Uracil DNA glycosyla... |
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[[Image:1q3f.gif|left|200px]]<br /> | [[Image:1q3f.gif|left|200px]]<br /><applet load="1q3f" size="350" color="white" frame="true" align="right" spinBox="true" | ||
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caption="1q3f, resolution 1.9Å" /> | caption="1q3f, resolution 1.9Å" /> | ||
'''Uracil DNA glycosylase bound to a cationic 1-aza-2'-deoxyribose-contianing DNA'''<br /> | '''Uracil DNA glycosylase bound to a cationic 1-aza-2'-deoxyribose-contianing DNA'''<br /> | ||
==Overview== | ==Overview== | ||
The DNA repair enzyme uracil DNA glycosylase has been crystallized with a | The DNA repair enzyme uracil DNA glycosylase has been crystallized with a cationic 1-aza-2'-deoxyribose-containing DNA that mimics the ultimate transition state of the reaction in which the water nucleophile attacks the anomeric center of the oxacarbenium ion-uracil anion reaction intermediate. Comparison with substrate and product structures, and the previous structure of the intermediate determined by kinetic isotope effects, reveals an exquisite example of geometric strain, least atomic motion, and electrophile migration in biological catalysis. This structure provides a rare opportunity to reconstruct the detailed structural transformations that occur along an enzymatic reaction coordinate. | ||
==Disease== | ==Disease== | ||
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==About this Structure== | ==About this Structure== | ||
1Q3F is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with PO4 and URA as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http:// | 1Q3F is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=PO4:'>PO4</scene> and <scene name='pdbligand=URA:'>URA</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q3F OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Amzel, L | [[Category: Amzel, L M.]] | ||
[[Category: Bianchet, M | [[Category: Bianchet, M A.]] | ||
[[Category: Ichikawa, Y.]] | [[Category: Ichikawa, Y.]] | ||
[[Category: Jiang, Y | [[Category: Jiang, Y L.]] | ||
[[Category: Seiple, L | [[Category: Seiple, L A.]] | ||
[[Category: Stivers, J | [[Category: Stivers, J T.]] | ||
[[Category: PO4]] | [[Category: PO4]] | ||
[[Category: URA]] | [[Category: URA]] | ||
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[[Category: udg]] | [[Category: udg]] | ||
''Page seeded by [http:// | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 14:35:25 2008'' | ||
Revision as of 15:35, 21 February 2008
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Uracil DNA glycosylase bound to a cationic 1-aza-2'-deoxyribose-contianing DNA
OverviewOverview
The DNA repair enzyme uracil DNA glycosylase has been crystallized with a cationic 1-aza-2'-deoxyribose-containing DNA that mimics the ultimate transition state of the reaction in which the water nucleophile attacks the anomeric center of the oxacarbenium ion-uracil anion reaction intermediate. Comparison with substrate and product structures, and the previous structure of the intermediate determined by kinetic isotope effects, reveals an exquisite example of geometric strain, least atomic motion, and electrophile migration in biological catalysis. This structure provides a rare opportunity to reconstruct the detailed structural transformations that occur along an enzymatic reaction coordinate.
DiseaseDisease
Known diseases associated with this structure: Immunodeficiency with hyper IgM, type 4 OMIM:[191525]
About this StructureAbout this Structure
1Q3F is a Single protein structure of sequence from Homo sapiens with and as ligands. Full crystallographic information is available from OCA.
ReferenceReference
Electrostatic guidance of glycosyl cation migration along the reaction coordinate of uracil DNA glycosylase., Bianchet MA, Seiple LA, Jiang YL, Ichikawa Y, Amzel LM, Stivers JT, Biochemistry. 2003 Nov 4;42(43):12455-60. PMID:14580190
Page seeded by OCA on Thu Feb 21 14:35:25 2008