8eog: Difference between revisions

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'''Unreleased structure'''


The entry 8eog is ON HOLD  until Paper Publication
==Structure of the human L-type voltage-gated calcium channel Cav1.2 complexed with L-leucine==
<StructureSection load='8eog' size='340' side='right'caption='[[8eog]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[8eog]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8EOG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8EOG FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CLR:CHOLESTEROL'>CLR</scene>, <scene name='pdbligand=LEU:LEUCINE'>LEU</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=WNZ:(2R)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(dodecanoyloxy)propyl+dodecanoate'>WNZ</scene>, <scene name='pdbligand=WO9:(2R)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(dodecanoyloxy)propyl+heptadecanoate'>WO9</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8eog FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8eog OCA], [https://pdbe.org/8eog PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8eog RCSB], [https://www.ebi.ac.uk/pdbsum/8eog PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8eog ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CA2D1_RABIT CA2D1_RABIT] The alpha-2/delta subunit of voltage-dependent calcium channels regulates calcium current density and activation/inactivation kinetics of the calcium channel. Plays an important role in excitation-contraction coupling.
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Voltage-gated ion channels (VGICs) comprise multiple structural units whose assembly is required for function(1,2). There is scant structural understanding of how VGIC subunits assemble and whether chaperone proteins are required. High-voltage activated calcium channels (Ca(V)s)(3,4) are paradigmatic multi-subunit VGICs whose function and trafficking is powerfully shaped by interactions between pore-forming Ca(V)1 or Ca(V)2 Ca(V)alpha(1)(3) and auxiliary Ca(V)beta(5), and Ca(V)alpha(2)delta subunits(6,7). Here, we present cryo-EM structures of human brain and cardiac Ca(V)1.2 bound with Ca(V)beta(3) to a chaperone, the endoplasmic reticulum membrane protein complex (EMC)(8,9), and of the assembled Ca(V)1.2/Ca(V)beta(3)/Ca(V)alpha(2)delta-1 channel. These provide a view of an EMC:client complex and define EMC sites, the TM and Cyto docks, whose interaction with the client channel causes partial extraction of a pore subunit and splays open the Ca(V)alpha(2)delta interaction site. The structures identify the Ca(V)alpha(2)delta binding site for gabapentinoid anti-pain and anti-anxiety drugs(6), show that EMC and Ca(V)alpha(2)delta channel interactions are mutually exclusive, and indicate that EMC to Ca(V)alpha(2)delta handoff involves a divalent ion-dependent step and Ca(V)1.2 element ordering. Disruption of the EMC:Ca(V) complex compromises Ca(V) function suggesting that the EMC acts as a channel holdase that facilitates channel assembly. Together, the structures unveil a Ca(V) assembly intermediate and EMC client binding sites, with potentially wide-reading implications for biogenesis of VGICs and other membrane proteins.


Authors:  
EMC chaperone-Ca(V) structure reveals an ion channel assembly intermediate.,Chen Z, Mondal A, Ali FA, Jang S, Niranjan S, Montano JL, Zaro BW, Minor DL Jr Nature. 2023 May 17. doi: 10.1038/s41586-023-06175-5. PMID:37196677<ref>PMID:37196677</ref>


Description:  
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
<div class="pdbe-citations 8eog" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Oryctolagus cuniculus]]
[[Category: Abderemane-Ali F]]
[[Category: Chen Z]]
[[Category: Minor DL]]
[[Category: Mondal A]]

Revision as of 07:04, 25 May 2023

Structure of the human L-type voltage-gated calcium channel Cav1.2 complexed with L-leucineStructure of the human L-type voltage-gated calcium channel Cav1.2 complexed with L-leucine

Structural highlights

8eog is a 3 chain structure with sequence from Homo sapiens and Oryctolagus cuniculus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, , , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CA2D1_RABIT The alpha-2/delta subunit of voltage-dependent calcium channels regulates calcium current density and activation/inactivation kinetics of the calcium channel. Plays an important role in excitation-contraction coupling.

Publication Abstract from PubMed

Voltage-gated ion channels (VGICs) comprise multiple structural units whose assembly is required for function(1,2). There is scant structural understanding of how VGIC subunits assemble and whether chaperone proteins are required. High-voltage activated calcium channels (Ca(V)s)(3,4) are paradigmatic multi-subunit VGICs whose function and trafficking is powerfully shaped by interactions between pore-forming Ca(V)1 or Ca(V)2 Ca(V)alpha(1)(3) and auxiliary Ca(V)beta(5), and Ca(V)alpha(2)delta subunits(6,7). Here, we present cryo-EM structures of human brain and cardiac Ca(V)1.2 bound with Ca(V)beta(3) to a chaperone, the endoplasmic reticulum membrane protein complex (EMC)(8,9), and of the assembled Ca(V)1.2/Ca(V)beta(3)/Ca(V)alpha(2)delta-1 channel. These provide a view of an EMC:client complex and define EMC sites, the TM and Cyto docks, whose interaction with the client channel causes partial extraction of a pore subunit and splays open the Ca(V)alpha(2)delta interaction site. The structures identify the Ca(V)alpha(2)delta binding site for gabapentinoid anti-pain and anti-anxiety drugs(6), show that EMC and Ca(V)alpha(2)delta channel interactions are mutually exclusive, and indicate that EMC to Ca(V)alpha(2)delta handoff involves a divalent ion-dependent step and Ca(V)1.2 element ordering. Disruption of the EMC:Ca(V) complex compromises Ca(V) function suggesting that the EMC acts as a channel holdase that facilitates channel assembly. Together, the structures unveil a Ca(V) assembly intermediate and EMC client binding sites, with potentially wide-reading implications for biogenesis of VGICs and other membrane proteins.

EMC chaperone-Ca(V) structure reveals an ion channel assembly intermediate.,Chen Z, Mondal A, Ali FA, Jang S, Niranjan S, Montano JL, Zaro BW, Minor DL Jr Nature. 2023 May 17. doi: 10.1038/s41586-023-06175-5. PMID:37196677[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Chen Z, Mondal A, Ali FA, Jang S, Niranjan S, Montaño JL, Zaro BW, Minor DL Jr. EMC chaperone-Ca(V) structure reveals an ion channel assembly intermediate. Nature. 2023 May 17. PMID:37196677 doi:10.1038/s41586-023-06175-5

8eog, resolution 3.30Å

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OCA