1k3b: Difference between revisions
New page: left|200px<br /> <applet load="1k3b" size="450" color="white" frame="true" align="right" spinBox="true" caption="1k3b, resolution 2.15Å" /> '''Crystal Structure o... |
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'''Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to an Endopeptidase Framework Creates the Machine for Activation of Granular Serine Proteases'''<br /> | '''Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to an Endopeptidase Framework Creates the Machine for Activation of Granular Serine Proteases'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
1K3B is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with NAG, CL and SO4 as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Dipeptidyl-peptidase_I Dipeptidyl-peptidase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.14.1 3.4.14.1] Full crystallographic information is available from [http:// | 1K3B is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=NAG:'>NAG</scene>, <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=SO4:'>SO4</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Dipeptidyl-peptidase_I Dipeptidyl-peptidase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.14.1 3.4.14.1] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K3B OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: hydrolase]] | [[Category: hydrolase]] | ||
''Page seeded by [http:// | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Feb 15 16:11:11 2008'' | ||
Revision as of 17:11, 15 February 2008
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Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to an Endopeptidase Framework Creates the Machine for Activation of Granular Serine Proteases
OverviewOverview
Dipeptidyl peptidase I (DPPI) or cathepsin C is the physiological, activator of groups of serine proteases from immune and inflammatory cells, vital for defense of an organism. The structure presented shows how an, additional domain transforms the framework of a papain-like endopeptidase, into a robust oligomeric protease-processing enzyme. The tetrahedral, arrangement of the active sites exposed to solvent allows approach of, proteins in their native state; the massive body of the exclusion domain, fastened within the tetrahedral framework excludes approach of a, polypeptide chain apart from its termini; and the carboxylic group of Asp1, positions the N-terminal amino group of the substrate. Based on a, structural comparison and interactions within the active site cleft, it is, suggested that the exclusion domain originates from a metallo-protease, inhibitor. The location of missense mutations, characterized in people, suffering from Haim-Munk and Papillon-Lefevre syndromes, suggests how they, disrupt the fold and function of the enzyme.
DiseaseDisease
Known diseases associated with this structure: Haim-Munk syndrome OMIM:[602365], Papillon-Lefevre syndrome OMIM:[602365], Periodontitis, juvenile OMIM:[602365]
About this StructureAbout this Structure
1K3B is a Protein complex structure of sequences from Homo sapiens with , and as ligands. Active as Dipeptidyl-peptidase I, with EC number 3.4.14.1 Full crystallographic information is available from OCA.
ReferenceReference
Structure of human dipeptidyl peptidase I (cathepsin C): exclusion domain added to an endopeptidase framework creates the machine for activation of granular serine proteases., Turk D, Janjic V, Stern I, Podobnik M, Lamba D, Dahl SW, Lauritzen C, Pedersen J, Turk V, Turk B, EMBO J. 2001 Dec 3;20(23):6570-82. PMID:11726493
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