8aht: Difference between revisions
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==Crystal structure of Plasmodium falciparum Ca2+/Calmodulin in complex with melittin== | |||
<StructureSection load='8aht' size='340' side='right'caption='[[8aht]], [[Resolution|resolution]] 2.20Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[8aht]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera] and [https://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8AHT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8AHT FirstGlance]. <br> | |||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8aht FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8aht OCA], [https://pdbe.org/8aht PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8aht RCSB], [https://www.ebi.ac.uk/pdbsum/8aht PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8aht ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/CALM_PLAF7 CALM_PLAF7] Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+) (PubMed:32821880). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases (PubMed:32821880).<ref>PMID:32821880</ref> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Calmodulin (CaM) is a Ca(2+) sensor protein found in all eukaryotic cells that regulates a large number of target proteins in a Ca(2+) concentration-dependent manner. As a transient type hub protein, it recognizes linear motifs of its targets, though for the Ca(2+)-dependent binding no consensus sequence was identified. Its complex with melittin, a major component of bee venom, is often used as a model system of protein - protein complexes. Yet, the structural aspects of the binding are not well understood, as only diverse, low-resolution data are available concerning the association. We present the crystal structure of melittin in complex with Ca(2+)-saturated calmodulins from two, evolutionarily distant species, Homo sapiens and Plasmodium falciparum representing three binding modes of the peptide. Results - augmented by molecular dynamics simulations - indicate that multiple binding modes can exist for CaM-melittin complexes, as an intrinsic characteristic of the binding. While the helical structure of melittin remains, swapping of its salt bridges and partial unfolding of its C-terminal segment can occur. In contrast to the classical way of target recognition by CaM, we found that different sets of residues can anchor at the hydrophobic pockets of CaM, which were considered as main recognition sites. Finally, the nanomolar binding affinity of the CaM-melittin complex is created by an ensemble of arrangements of similar stability - tight binding is achieved not by optimized specific interactions but by simultaneously satisfying less optimal interaction patterns in co-existing different conformers. | |||
Structures of calmodulin-melittin complexes show multiple binding modes lacking classical anchoring interactions.,Durvanger Z, Juhasz T, Liliom K, Harmat V J Biol Chem. 2023 Mar 9:104596. doi: 10.1016/j.jbc.2023.104596. PMID:36906144<ref>PMID:36906144</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: Durvanger | <div class="pdbe-citations 8aht" style="background-color:#fffaf0;"></div> | ||
[[Category: Harmat | == References == | ||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Apis mellifera]] | |||
[[Category: Large Structures]] | |||
[[Category: Plasmodium falciparum]] | |||
[[Category: Durvanger Z]] | |||
[[Category: Harmat V]] | |||
Revision as of 10:20, 22 March 2023
Crystal structure of Plasmodium falciparum Ca2+/Calmodulin in complex with melittinCrystal structure of Plasmodium falciparum Ca2+/Calmodulin in complex with melittin
Structural highlights
FunctionCALM_PLAF7 Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+) (PubMed:32821880). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases (PubMed:32821880).[1] Publication Abstract from PubMedCalmodulin (CaM) is a Ca(2+) sensor protein found in all eukaryotic cells that regulates a large number of target proteins in a Ca(2+) concentration-dependent manner. As a transient type hub protein, it recognizes linear motifs of its targets, though for the Ca(2+)-dependent binding no consensus sequence was identified. Its complex with melittin, a major component of bee venom, is often used as a model system of protein - protein complexes. Yet, the structural aspects of the binding are not well understood, as only diverse, low-resolution data are available concerning the association. We present the crystal structure of melittin in complex with Ca(2+)-saturated calmodulins from two, evolutionarily distant species, Homo sapiens and Plasmodium falciparum representing three binding modes of the peptide. Results - augmented by molecular dynamics simulations - indicate that multiple binding modes can exist for CaM-melittin complexes, as an intrinsic characteristic of the binding. While the helical structure of melittin remains, swapping of its salt bridges and partial unfolding of its C-terminal segment can occur. In contrast to the classical way of target recognition by CaM, we found that different sets of residues can anchor at the hydrophobic pockets of CaM, which were considered as main recognition sites. Finally, the nanomolar binding affinity of the CaM-melittin complex is created by an ensemble of arrangements of similar stability - tight binding is achieved not by optimized specific interactions but by simultaneously satisfying less optimal interaction patterns in co-existing different conformers. Structures of calmodulin-melittin complexes show multiple binding modes lacking classical anchoring interactions.,Durvanger Z, Juhasz T, Liliom K, Harmat V J Biol Chem. 2023 Mar 9:104596. doi: 10.1016/j.jbc.2023.104596. PMID:36906144[2] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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