8ff6: Difference between revisions

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-'''Unreleased structure'''
-The entry 8ff6 is ON HOLD
+==Cytosolic ascorbate peroxidase mutant from Panicum virgatum==
+<StructureSection load='8ff6' size='340' side='right'caption='[[8ff6]], [[Resolution|resolution]] 2.49&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[8ff6]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Panicum_virgatum Panicum virgatum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8FF6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8FF6 FirstGlance]. <br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8ff6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8ff6 OCA], [https://pdbe.org/8ff6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8ff6 RCSB], [https://www.ebi.ac.uk/pdbsum/8ff6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8ff6 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/A0A8T0NWI5_PANVG A0A8T0NWI5_PANVG]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+APX is a key antioxidant enzyme in higher plants, scavenging H(2)O(2) with ascorbate in several cellular compartments. Here, we report the crystal structures of cytosolic ascorbate peroxidase from switchgrass (Panicum virgatum L., Pvi), a strategic feedstock plant with several end uses. The overall structure of PviAPX was similar to the structures of other APX family members, with a bound ascorbate molecule at the É£-heme edge pocket as in other APXs. Our results indicated that the H(2)O(2)-dependent oxidation of ascorbate displayed positive cooperativity. Significantly, our study suggested that PviAPX can oxidize a broad range of phenylpropanoids with delta-meso site in a rather similar efficiency, which reflects its role in the fortification of cell walls in response to insect feeding. Based on detailed structural and kinetic analyses and molecular docking, as well as that of closely related APX enzymes, the critical residues in each substrate-binding site of PviAPX are proposed. Taken together, these observations shed new light on the function and catalysis of PviAPX, and potentially benefit efforts improve plant health and biomass quality in bioenergy and forage crops.
-Authors: Zhang, B., Kang, C.
+Activity of Cytosolic Ascorbate Peroxidase (APX) from Panicum virgatum against Ascorbate and Phenylpropanoids.,Zhang B, Lewis JA, Kovacs F, Sattler SE, Sarath G, Kang C Int J Mol Sci. 2023 Jan 16;24(2):1778. doi: 10.3390/ijms24021778. PMID:36675291<ref>PMID:36675291</ref>
-Description: Cytosolic ascorbate peroxidase mutant from Panicum virgatum
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Zhang, B]]
+<div class="pdbe-citations 8ff6" style="background-color:#fffaf0;"></div>
-[[Category: Kang, C]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Panicum virgatum]]
+[[Category: Kang C]]
+[[Category: Zhang B]]