3ko8: Difference between revisions
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
<StructureSection load='3ko8' size='340' side='right'caption='[[3ko8]], [[Resolution|resolution]] 1.80Å' scene=''> | <StructureSection load='3ko8' size='340' side='right'caption='[[3ko8]], [[Resolution|resolution]] 1.80Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3ko8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[3ko8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrobaculum_calidifontis_JCM_11548 Pyrobaculum calidifontis JCM 11548]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KO8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KO8 FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ko8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ko8 OCA], [https://pdbe.org/3ko8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ko8 RCSB], [https://www.ebi.ac.uk/pdbsum/3ko8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ko8 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ko8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ko8 OCA], [https://pdbe.org/3ko8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ko8 RCSB], [https://www.ebi.ac.uk/pdbsum/3ko8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ko8 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/A3MUJ4_PYRCJ A3MUJ4_PYRCJ] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 25: | Line 27: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: | [[Category: Pyrobaculum calidifontis JCM 11548]] | ||
[[Category: Kawai T]] | |||
[[Category: Kawai | [[Category: Ohshima T]] | ||
[[Category: Ohshima | [[Category: Sakuraba H]] | ||
[[Category: Sakuraba | [[Category: Yoneda K]] | ||
[[Category: Yoneda | |||
Latest revision as of 19:15, 1 November 2023
Crystal Structure of UDP-galactose 4-epimeraseCrystal Structure of UDP-galactose 4-epimerase
Structural highlights
FunctionPublication Abstract from PubMedThe crystal structure of a highly thermostable UDP-galactose 4-epimerase (GalE) from the hyperthermophilic archaeon Pyrobaculum calidifontis was determined at a resolution of 1.8A. The asymmetric unit contained one subunit, and the functional dimer was generated by a crystallographic two-fold axis. Each monomer consisted of a Rossmann-fold domain with NAD bound and a carboxyl terminal domain. The overall structure of P. calidifontis GalE showed significant similarity to the structures of the GalEs from Escherichia coli, human and Trypanosoma brucei. However, the sizes of several surface loops were markedly smaller in P. calidifontis GalE than the corresponding loops in the other enzymes. Structural comparison revealed that the presence of an extensive hydrophobic interaction at the subunit interface is likely the main factor contributing to the hyperthermostability of the P. calidifontis enzyme. Within the NAD-binding site of P. calidifontis GalE, a loop (NAD-binding loop) tightly holds the adenine ribose moiety of NAD. Moreover, a deletion mutant lacking this loop bound NAD in a loose, reversible manner. Thus the presence of the NAD-binding loop in GalE is largely responsible for preventing the release of the cofactor from the holoenzyme. Crystal structure of UDP-galactose 4-epimerase from the hyperthermophilic archaeon Pyrobaculum calidifontis.,Sakuraba H, Kawai T, Yoneda K, Ohshima T Arch Biochem Biophys. 2011 Aug 15;512(2):126-34. Epub 2011 May 27. PMID:21645492[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
|
| ||||||||||||||||||