7z2i: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older editNewer edit →
No edit summary
No edit summary
Line 5: Line 5:
<table><tr><td colspan='2'>[[7z2i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7Z2I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7Z2I FirstGlance]. <br>
<table><tr><td colspan='2'>[[7z2i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7Z2I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7Z2I FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=I9O:5-[[3-(trifluoromethyl)phenyl]methyl]-1,4,6,7-tetrahydroimidazo[4,5-c]pyridine'>I9O</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=I9O:5-[[3-(trifluoromethyl)phenyl]methyl]-1,4,6,7-tetrahydroimidazo[4,5-c]pyridine'>I9O</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[7z25|7z25]]</div></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7z2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7z2i OCA], [https://pdbe.org/7z2i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7z2i RCSB], [https://www.ebi.ac.uk/pdbsum/7z2i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7z2i ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7z2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7z2i OCA], [https://pdbe.org/7z2i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7z2i RCSB], [https://www.ebi.ac.uk/pdbsum/7z2i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7z2i ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[[https://www.uniprot.org/uniprot/TRY1_BOVIN TRY1_BOVIN]]
Ligand-based (19) F NMR screening is a highly effective and well-established hit-finding approach. The high sensitivity to protein binding makes it particularly suitable for fragment screening. Different criteria can be considered for generating fluorinated fragment libraries. One common strategy is to assemble a large, diverse, well-designed and characterized fragment library which is screened in mixtures, generated based on experimental (19) F NMR chemical shifts. Here, we introduce a complementary knowledge-based (19) F NMR screening approach, named (19) Focused screening, enabling the efficient screening of putative active molecules selected by computational hit finding methodologies, in mixtures assembled and on-the-fly deconvoluted based on predicted (19) F NMR chemical shifts. In this study, we developed a novel approach, named LEFshift, for (19) F NMR chemical shift prediction using rooted topological fluorine torsion fingerprints in combination with a random forest machine learning method. A demonstration of this approach to a real test case is reported.
 
Efficient Screening of Target-Specific Selected Compounds in Mixtures by (19) F NMR Binding Assay with Predicted (19) F NMR Chemical Shifts.,Vulpetti A, Lingel A, Dalvit C, Schiering N, Oberer L, Henry C, Lu Y ChemMedChem. 2022 Apr 27:e202200163. doi: 10.1002/cmdc.202200163. PMID:35475323<ref>PMID:35475323</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 7z2i" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Trypsin 3D structures|Trypsin 3D structures]]
*[[Trypsin 3D structures|Trypsin 3D structures]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bos taurus]]
[[Category: Bos taurus]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Trypsin]]
[[Category: Dalvit C]]
[[Category: Dalvit, C]]
[[Category: Schiering N]]
[[Category: Schiering, N]]
[[Category: Vulpetti A]]
[[Category: Vulpetti, A]]
[[Category: Fluorine containing small molecule inhibitor]]
[[Category: Fragment complex]]
[[Category: Hydrolase]]

Revision as of 08:34, 8 September 2022

TRYPSIN (BOVINE) COMPLEXED WITH compound 4TRYPSIN (BOVINE) COMPLEXED WITH compound 4

Structural highlights

7z2i is a 1 chain structure with sequence from Bos taurus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[TRY1_BOVIN]

See Also

7z2i, resolution 1.09Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=7z2i&oldid=3624781"