3s0b: Difference between revisions

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<StructureSection load='3s0b' size='340' side='right'caption='[[3s0b]], [[Resolution|resolution]] 1.22&Aring;' scene=''>
<StructureSection load='3s0b' size='340' side='right'caption='[[3s0b]], [[Resolution|resolution]] 1.22&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3s0b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Apime Apime]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3S0B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3S0B FirstGlance]. <br>
<table><tr><td colspan='2'>[[3s0b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3S0B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3S0B FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FNA:N-PHENYLNAPHTHALEN-1-AMINE'>FNA</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.22&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3rzs|3rzs]], [[3s0a|3s0a]], [[3s0d|3s0d]], [[3s0e|3s0e]], [[3s0f|3s0f]], [[3s0g|3s0g]]</div></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FNA:N-PHENYLNAPHTHALEN-1-AMINE'>FNA</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NP_001035313 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7460 APIME])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3s0b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3s0b OCA], [https://pdbe.org/3s0b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3s0b RCSB], [https://www.ebi.ac.uk/pdbsum/3s0b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3s0b ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3s0b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3s0b OCA], [https://pdbe.org/3s0b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3s0b RCSB], [https://www.ebi.ac.uk/pdbsum/3s0b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3s0b ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Apis mellifera (Amel) relies on its olfactory system to detect and identify new-sources of floral food. The Odorant-Binding Proteins (OBPs) are the first proteins involved in odorant recognition and interaction, before activation of the olfactory receptors. The Amel genome possess a set of 21 OBPs, much fewer compared to the 60-70 OBPs found in Diptera genomes. We have undertaken a structural proteomics study of Amel OBPs, alone or in complex with odorant or model compounds. We report here the first 3D structure of a member of the C-minus class OBPs, AmelOBP14, characterized by only two disulfide bridges of the three typical of classical OBPs. We show that AmelOBP14 possesses a core of 6 alpha-helices comparable to that of classical OBPs, and an extra exposed C-terminal helix. Its binding site is located within this core and is completely closed. Fluorescent experiments using 1-NPN displacement demonstrate that AmelOBP14 is able to bind several compounds with sub micromolar dissociation constants, among which citralva and eugenol exhibit the highest affinities. We have determined the structures of AmelOBP14 in complex with 1-NPN, eugenol and citralva, explaining their strong binding. Finally, by introducing a double cysteine mutant at positions 44 and 97, we show that a third disulfide bridge was formed in the same position as in classical OBPs without disturbing the fold of AmelOBP14.
Crystal structure of Apis mellifera OBP14, a C-minus odorant-binding protein, and its complexes with odorant molecules.,Spinelli S, Lagarde A, Iovinella I, Legrand P, Tegoni M, Pelosi P, Cambillau C Insect Biochem Mol Biol. 2011 Oct 31. PMID:22075131<ref>PMID:22075131</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 3s0b" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Odorant binding protein 3D structures|Odorant binding protein 3D structures]]
*[[Odorant binding protein 3D structures|Odorant binding protein 3D structures]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Apime]]
[[Category: Apis mellifera]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Cambillau, C]]
[[Category: Cambillau C]]
[[Category: Iovinella, I]]
[[Category: Iovinella I]]
[[Category: Lagarde, A]]
[[Category: Lagarde A]]
[[Category: Pelosi, P]]
[[Category: Pelosi P]]
[[Category: Spinelli, S]]
[[Category: Spinelli S]]
[[Category: Tegoni, M]]
[[Category: Tegoni M]]
[[Category: All helical protein]]
[[Category: Antennae]]
[[Category: Transport protein]]
[[Category: Unknown odorant molecule]]

Revision as of 15:41, 14 March 2024

Apis mellifera OBP14 in complex with the fluorescent probe 1-N-phenylnaphthylamine (NPN)Apis mellifera OBP14 in complex with the fluorescent probe 1-N-phenylnaphthylamine (NPN)

Structural highlights

3s0b is a 1 chain structure with sequence from Apis mellifera. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.22Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

See Also

3s0b, resolution 1.22Å

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