Structure superposition tools: Difference between revisions
Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) |
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*Publication (2003)<ref name="fatcat">PMID: 14534198</ref> "... the FATCAT algorithm achieves more accurate structure alignments than current methods, while at the same time introducing fewer hinges." | *Publication (2003)<ref name="fatcat">PMID: 14534198</ref> "... the FATCAT algorithm achieves more accurate structure alignments than current methods, while at the same time introducing fewer hinges." | ||
*Help on server: YES with snapshots; some context-sensitive help. | *Help on server: YES with snapshots; some context-sensitive help. | ||
*Does | *Does superposition involve sequence comparison? UNCLEAR. | ||
*Rigid | *Rigid superposition: YES (optional) | ||
*Flexible | *Flexible superposition: YES (optional) | ||
*Structure neighbors (pre-calculated): YES | *Structure neighbors (pre-calculated): YES | ||
*Pairwise | *Pairwise superposition including uploaded models: YES | ||
* | *Superpose DNA: NO. | ||
* | *Superpose multiple protein chains: NO. Aligns a single pair of chains at a time. | ||
*Structure-based sequence alignment: YES | *Structure-based sequence alignment: YES | ||
*Visualization: | *Visualization: YES. | ||
*Color by deviation: '''NO'''. (Colors identify twist/hinge boundaries.) | *Color by deviation: '''NO'''. (Colors identify twist/hinge boundaries.) | ||
*Offered by RCSB? YES | *Offered by RCSB? YES | ||
*Special features: | *Special features: | ||
**Produces a morph between the two | **Produces a [[morph]] between the two superposed chains (at the link "Interpolating between ..."). | ||
**Offers a RasMol script to color each rigid segment distinctly (separated by twists/hinges). | **Offers a RasMol script to color each rigid segment distinctly (separated by twists/hinges). | ||