7oxa: Difference between revisions
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==== | ==Target-bound SpCas9 complex with AAVS1 chimeric RNA-DNA guide== | ||
<StructureSection load='7oxa' size='340' side='right'caption='[[7oxa]]' scene=''> | <StructureSection load='7oxa' size='340' side='right'caption='[[7oxa]], [[Resolution|resolution]] 2.15Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br> | <table><tr><td colspan='2'>[[7oxa]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_serotype_M1 Streptococcus pyogenes serotype M1] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OXA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OXA FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7oxa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7oxa OCA], [https://pdbe.org/7oxa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7oxa RCSB], [https://www.ebi.ac.uk/pdbsum/7oxa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7oxa ProSAT]</span></td></tr> | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7oxa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7oxa OCA], [https://pdbe.org/7oxa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7oxa RCSB], [https://www.ebi.ac.uk/pdbsum/7oxa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7oxa ProSAT]</span></td></tr> | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/CAS9_STRP1 CAS9_STRP1] CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA) (Probable). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9/crRNA/tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer. The target strand not complementary to crRNA is first cut endonucleolytically, then trimmed by 3'-5' exonucleolytically. DNA-binding requires protein and both RNA species. Cas9 probably recognizes a short motif in the CRISPR repeat sequences (the PAM or protospacer adjacent motif) to help distinguish self versus nonself.<ref>PMID:21455174</ref> <ref>PMID:22745249</ref> | |||
==See Also== | |||
*[[Endonuclease 3D structures|Endonuclease 3D structures]] | |||
== References == | |||
<references/> | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: | [[Category: Streptococcus pyogenes serotype M1]] | ||
[[Category: Synthetic construct]] | |||
[[Category: Baek K]] | |||
[[Category: Banh L]] | |||
[[Category: Cameron P]] | |||
[[Category: Donohoue P]] | |||
[[Category: Fuller CK]] | |||
[[Category: Gibson J]] | |||
[[Category: Irby MJ]] | |||
[[Category: Jinek M]] | |||
[[Category: Kohrs B]] | |||
[[Category: Lau E]] | |||
[[Category: May AP]] | |||
[[Category: Nyer DB]] | |||
[[Category: Owen ALG]] | |||
[[Category: Pacesa M]] | |||
[[Category: Rotstein T]] | |||
[[Category: Slorach EM]] | |||
[[Category: Toh MT]] | |||
[[Category: Vidal B]] | |||
[[Category: Van Overbeek M]] | |||