6zut: Difference between revisions
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==Cu nitrite reductase MSOX series at 170K, dose point 5== | ==Cu nitrite reductase MSOX series at 170K, dose point 5== | ||
<StructureSection load='6zut' size='340' side='right'caption='[[6zut]]' scene=''> | <StructureSection load='6zut' size='340' side='right'caption='[[6zut]], [[Resolution|resolution]] 1.15Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZUT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZUT FirstGlance]. <br> | <table><tr><td colspan='2'>[[6zut]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_cycloclastes Achromobacter cycloclastes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZUT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZUT FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zut OCA], [https://pdbe.org/6zut PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zut RCSB], [https://www.ebi.ac.uk/pdbsum/6zut PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zut ProSAT]</span></td></tr> | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.15Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NO:NITRIC+OXIDE'>NO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zut OCA], [https://pdbe.org/6zut PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zut RCSB], [https://www.ebi.ac.uk/pdbsum/6zut PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zut ProSAT]</span></td></tr> | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/NIR_ACHCY NIR_ACHCY] | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
The design and synthesis of copper complexes that can reduce nitrite to NO has attracted considerable interest. They have been guided by the structural information on the catalytic Cu centre of the widespread enzymes Cu nitrite reductases but the chemically novel side-on binding of NO observed in all crystallographic studies of these enzymes has been questioned in terms of its functional relevance. We show conversion of NO2 (-) to NO in the crystal maintained at 170 K and present 'molecular movies' defining events during enzyme turnover including the formation of side-on Cu-NO intermediate. DFT modelling suggests that both true {CuNO}(11) and formal {CuNO}(10) states may occur as side-on forms in an enzymatic active site with the stability of the {CuNO}(10) side-on form governed by the protonation state of the histidine ligands. Formation of a copper-nitrosyl intermediate thus needs to be accommodated in future design templates for functional synthetic Cu-NiR complexes. | |||
Nature of the copper-nitrosyl intermediates of copper nitrite reductases during catalysis.,Hough MA, Conradie J, Strange RW, Antonyuk SV, Eady RR, Ghosh A, Hasnain SS Chem Sci. 2020 Oct 20;11(46):12485-12492. doi: 10.1039/d0sc04797j. PMID:34094452<ref>PMID:34094452</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 6zut" style="background-color:#fffaf0;"></div> | |||
==See Also== | |||
*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]] | |||
== References == | |||
<references/> | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Achromobacter cycloclastes]] | |||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Anyonyuk SV]] | [[Category: Anyonyuk SV]] | ||