7oc9: Difference between revisions
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==Structure of Bdellovibrio bacteriovorus Bd0675== | ==Structure of Bdellovibrio bacteriovorus Bd0675== | ||
<StructureSection load='7oc9' size='340' side='right'caption='[[7oc9]]' scene=''> | <StructureSection load='7oc9' size='340' side='right'caption='[[7oc9]], [[Resolution|resolution]] 1.50Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OC9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OC9 FirstGlance]. <br> | <table><tr><td colspan='2'>[[7oc9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bdeba Bdeba]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OC9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OC9 FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7oc9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7oc9 OCA], [https://pdbe.org/7oc9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7oc9 RCSB], [https://www.ebi.ac.uk/pdbsum/7oc9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7oc9 ProSAT]</span></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=TBU:TERTIARY-BUTYL+ALCOHOL'>TBU</scene></td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Bd0675 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264462 BDEBA])</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7oc9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7oc9 OCA], [https://pdbe.org/7oc9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7oc9 RCSB], [https://www.ebi.ac.uk/pdbsum/7oc9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7oc9 ProSAT]</span></td></tr> | |||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
The biological and functional significance of selected Critical Assessment of Techniques for Protein Structure Prediction 14 (CASP14) targets are described by the authors of the structures. The authors highlight the most relevant features of the target proteins and discuss how well these features were reproduced in the respective submitted predictions. The overall ability to predict three-dimensional structures of proteins has improved remarkably in CASP14, and many difficult targets were modeled with impressive accuracy. For the first time in the history of CASP, the experimentalists not only highlighted that computational models can accurately reproduce the most critical structural features observed in their targets, but also envisaged that models could serve as a guidance for further studies of biologically-relevant properties of proteins. | |||
Target highlights in CASP14: Analysis of models by structure providers.,Alexander LT, Lepore R, Kryshtafovych A, Adamopoulos A, Alahuhta M, Arvin AM, Bomble YJ, Bottcher B, Breyton C, Chiarini V, Chinnam NB, Chiu W, Fidelis K, Grinter R, Gupta GD, Hartmann MD, Hayes CS, Heidebrecht T, Ilari A, Joachimiak A, Kim Y, Linares R, Lovering AL, Lunin VV, Lupas AN, Makbul C, Michalska K, Moult J, Mukherjee PK, Nutt WS, Oliver SL, Perrakis A, Stols L, Tainer JA, Topf M, Tsutakawa SE, Valdivia-Delgado M, Schwede T Proteins. 2021 Sep 25. doi: 10.1002/prot.26247. PMID:34561912<ref>PMID:34561912</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 7oc9" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Bdeba]] | |||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Lovering | [[Category: Lovering, A L]] | ||
[[Category: Valdivia-Delgado M]] | [[Category: Valdivia-Delgado, M]] | ||
[[Category: Bdellovibrio secretion cryptic]] | |||
[[Category: Unknown function]] | |||
Revision as of 19:02, 3 November 2021
Structure of Bdellovibrio bacteriovorus Bd0675Structure of Bdellovibrio bacteriovorus Bd0675
Structural highlights
Publication Abstract from PubMedThe biological and functional significance of selected Critical Assessment of Techniques for Protein Structure Prediction 14 (CASP14) targets are described by the authors of the structures. The authors highlight the most relevant features of the target proteins and discuss how well these features were reproduced in the respective submitted predictions. The overall ability to predict three-dimensional structures of proteins has improved remarkably in CASP14, and many difficult targets were modeled with impressive accuracy. For the first time in the history of CASP, the experimentalists not only highlighted that computational models can accurately reproduce the most critical structural features observed in their targets, but also envisaged that models could serve as a guidance for further studies of biologically-relevant properties of proteins. Target highlights in CASP14: Analysis of models by structure providers.,Alexander LT, Lepore R, Kryshtafovych A, Adamopoulos A, Alahuhta M, Arvin AM, Bomble YJ, Bottcher B, Breyton C, Chiarini V, Chinnam NB, Chiu W, Fidelis K, Grinter R, Gupta GD, Hartmann MD, Hayes CS, Heidebrecht T, Ilari A, Joachimiak A, Kim Y, Linares R, Lovering AL, Lunin VV, Lupas AN, Makbul C, Michalska K, Moult J, Mukherjee PK, Nutt WS, Oliver SL, Perrakis A, Stols L, Tainer JA, Topf M, Tsutakawa SE, Valdivia-Delgado M, Schwede T Proteins. 2021 Sep 25. doi: 10.1002/prot.26247. PMID:34561912[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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