Calculating GDT TS: Difference between revisions
Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) |
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5. Caveat: If you let your browser auto-fill the email address slot, make sure to clear any other slots that got auto-filled inadvertently. Otherwise you may get an error message. | 5. Caveat: If you let your browser auto-fill the email address slot, make sure to clear any other slots that got auto-filled inadvertently. Otherwise you may get an error message. | ||
6. | 6. Add at the end of the default parameters "-d:4.0". Thus you will submit your job with these parameters: | ||
:'''-4 -o2 -gdc -lga_m -stral -d:4.0''' | |||
:(Without this, LGA defaults to 5.0 Å, but CASP uses 4.0.) | |||
7. Press the '''START''' button. | |||
In the results for Run 1, you may be interested in the '''RMSD''' and '''Seq_Id''' for the superposition deemed optimal by this server. | In the results for Run 1, you may be interested in the '''RMSD''' and '''Seq_Id''' for the superposition deemed optimal by this server. | ||