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Transcription initiation factors 3D structures: Difference between revisions

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**[[5fur]] – hTFIIA + hTFIIF + TBP + DNA - CryoEM<br />
**[[5fur]] – hTFIIA + hTFIIF + TBP + DNA - CryoEM<br />
**[[1ytf]], [[1nh2]], [[1rm1]] – yTFIIA + TBP + DNA – yeast<br />
**[[1ytf]], [[1nh2]], [[1rm1]] – yTFIIA + TBP + DNA – yeast<br />
**[[7oh9]], [[7oha]] – yTFIIA in nucleosome complex - CryoEM<br />


*TFIIB
*TFIIB
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**[[5n9g]] – hTFIIIB + TBP + DNA<br />
**[[5n9g]] – hTFIIIB + TBP + DNA<br />
**[[6f44]], [[6f42]], [[6f41]], [[6f40]], [[6eu0]], [[6cnf]], [[6cnd]], [[6cnc]], [[6cnb]] – yTFIIIB + RNA polymerase III – Cryo EM<br />
**[[6f44]], [[6f42]], [[6f41]], [[6f40]], [[6eu0]], [[6cnf]], [[6cnd]], [[6cnc]], [[6cnb]] – yTFIIIB + RNA polymerase III – Cryo EM<br />
**[[7q5b]] – yTFIIIB in TY3 retrotransposon complex – Cryo EM<br />


*TFIIIC see [[Transcription factor tau]]
*TFIIIC see [[Transcription factor tau]]
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**[[1bh8]] – hTFIID<BR />
**[[1bh8]] – hTFIID<BR />
**[[1eqf]] – hTFIID subunit 1<br />
**[[1eqf]], [[7k3o]] – hTFIID subunit 1<br />
**[[6fic]] – hTFIID subunit 1 + inhibitor<br />
**[[6fic]], [[7jjg]], [[7jjh]], [[7jsp]], [[7jtc]], [[7k03]], [[7k0d]], [[7k0u]], [[7k1p]], [[7k27]], [[7k42]], [[7k6f]], [[7l6x]], [[7lb0]], [[7lb1]], [[7lb2]], [[7lb3]], [[7n42]], [[7p4s]], [[7t2i]], [[7t36]] – hTFIID subunit 1 + inhibitor<br />
**[[3uv5]] – hTFIID subunit 1 bromodomain 1-2<br />
**[[3uv5]] – hTFIID subunit 1 bromodomain 1-2<br />
**[[3uv4]] – hTFIID subunit 1 bromodomain 2 1501-1635<br />
**[[3uv4]] – hTFIID subunit 1 bromodomain 2 1501-1635<br />
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**[[4grw]] - hTFIID subunits 1+7 <br />
**[[4grw]] - hTFIID subunits 1+7 <br />
**[[6f3t]] - hTFIID subunits 5+6+9 <br />
**[[6f3t]] - hTFIID subunits 5+6+9 <br />
**[[6mzl]] - hTFIID subunits 1-13 + TBP – Cryo EM<br />
**[[6mzl]], [[7eg9]], [[7egb]], [[7egc]], [[7ege]], [[7ena]], [[7enc]]  - hTFIID subunits 1-13 + TBP – Cryo EM<br />
**[[6mzd]] - hTFIID subunits 1,3-6,9-13 + TBP – Cryo EM<br />
**[[6mzd]], [[7egf]] - hTFIID subunits 1,3-6,9-13 + TBP – Cryo EM<br />
**[[6mzc]] - hTFIID subunits 2,4-6,8-12 – Cryo EM<br />
**[[6mzc]], [[7egg]] - hTFIID subunits 2,4-6,8-12 – Cryo EM<br />
**[[7egh]] - hTFIID subunits 1,2,6-8 + DNA – Cryo EM<br />
**[[7ktr]], [[7kts]] - hTFIID in SAGA coactivator complex – Cryo EM<br />At
**[[1bh9]] – hTFIID + PCMBS<BR />
**[[1bh9]] – hTFIID + PCMBS<BR />
**[[6df7]], [[6df4]] – TFIID subunit 1 bromodomain 2 + inhibitor - rabbit<br />
**[[6df7]], [[6df4]] – TFIID subunit 1 bromodomain 2 + inhibitor - rabbit<br />
**[[1tba]] – TFIID – ''Drosophila melanogaster'' - NMR<BR />
**[[1tba]] – TFIID – ''Drosophila melanogaster'' - NMR<BR />
**[[1qn3]], [[1qn4]], [[1qn5]], [[1qn6]], [[1qn7]], [[1qn8]], [[1qn9]], [[1qna]], [[1qnb]], [[1qnc]], [[1qne]] – TFIID + DNA – ''Arabidopsis thaliana''<br />
**[[1qn3]], [[1qn4]], [[1qn5]], [[1qn6]], [[1qn7]], [[1qn8]], [[1qn9]], [[1qna]], [[1qnb]], [[1qnc]], [[1qne]] – TFIID + DNA – ''Arabidopsis thaliana''<br />
**[[7ac1]] - AtTFIID subunit 4 RST domain - NMR<br />
**[[4oy2]] - yTFIID subunits 1+7 <br />
**[[4oy2]] - yTFIID subunits 1+7 <br />
**[[6mip]] - yTFIID subunits 14 <br />
**[[6mip]] - yTFIID subunits 14 <br />
**[[6lqz]] - yTFIID subunit 14 + STH1EBMC - NMR<br />
**[[6lqz]] - yTFIID subunit 14 + STH1EBMC - NMR<br />
**[[5iok]], [[5d7e]], [[6miq]], [[6mio]], [[6min]] – yTFIID subunit 14 YEATS domain 1-137 + histone peptide<br />
**[[5iok]], [[5d7e]], [[6miq]], [[6mio]], [[6min]], [[7f4a]] – yTFIID subunit 14 YEATS domain 1-137 + histone peptide<br />
**[[6t9j]] - yTFIID subunit 12 + Spt20 + transcription-associated protein – Cryo EM <br />
**[[6t9j]] - yTFIID subunit 12 + Spt20 + transcription-associated protein – Cryo EM <br />
**[[6t9k]], [[6t9i]] - yTFIID in SAGA complex – Cryo EM <br />
**[[6t9k]], [[6t9i]] - yTFIID in SAGA complex – Cryo EM <br />
**[[6tbm]], [[6tb4]], [[6hqa]] - TFIID in SAGA complex – ''Komagataella phaffii'' – Cryo EM <br />
**[[6tbm]], [[6tb4]], [[6hqa]] - TFIID in SAGA complex – ''Komagataella phaffii'' – Cryo EM <br />
*TFIID+TFIIA
**[[7egd]], [[7egi]], [[7egj]] – hTFIID+TFIIA + TBP + DNA – Cryo EM<br />


*TFIIE
*TFIIE
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**[[1onv]] – hTFIIF C terminal + serine phosphatase peptide - NMR<br />
**[[1onv]] – hTFIIF C terminal + serine phosphatase peptide - NMR<br />
**[[2k7l]] – hTFIIF C terminal + FCP1 peptide - NMR<br />
**[[2k7l]] – hTFIIF C terminal + FCP1 peptide - NMR<br />
**[[7mei]], [[7mk9]] – yTFIIH in trailing EC complex  – Cryo EM<br />


*TFIIH
*TFIIH


**[[5ivw]], [[6o9m]] – hTFIIH in preinitiation complex  – Cryo EM<br />
**[[5ivw]], [[6o9m]], [[7o4k]], [[7o4l]] – hTFIIH in preinitiation complex  – Cryo EM<br />


*TF in RNA polymerase II
*TF in RNA polymerase II


**[[5iy6]], [[5iy7]], [[5iy8]], [[5iy9]], [[5iya]], [[5iyb]], [[5iyc]], [[5iyd]] – hTFIIA + hTFIIB + hTFIIE + hTFIIF + hTFIIH + DNA – Cryo EM<br />
**[[5iy6]], [[5iy7]], [[5iy8]], [[5iy9]], [[5iya]], [[5iyb]], [[5iyc]], [[5iyd]] – hTFIIA + hTFIIB + hTFIIE + hTFIIF + hTFIIH + DNA – Cryo EM<br />
**[[7edx]], [[7eg7]], [[7eg8]], [[7eg9]], [[7ega]], [[7nvv]], [[7nvy]], [[7nvz]], [[7nw0]] – hTFII in RNA polymerase – Cryo EM<br />
**[[5fyw]] – yTFIIA + yTFIIE + yTFIIF + DNA <br />
**[[5fyw]] – yTFIIA + yTFIIE + yTFIIF + DNA <br />
**[[5fz5]], [[6gym]], [[6gyl]] – yTFIIA + yTFIIE + yTFIIF + DNA – Cryo EM<br />
**[[5fz5]], [[6gym]], [[6gyl]] – yTFIIA + yTFIIE + yTFIIF + DNA – Cryo EM<br />
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*TF RRN or RNA polymerase I-specific transcription initiation factor RRN
*TF RRN or RNA polymerase I-specific transcription initiation factor RRN


**[[7oba]] – hTF RRN3 in RNA polymerase I – Cryo EM<br />
**[[3tj1]] – yTF RRN3 <br />
**[[3tj1]] – yTF RRN3 <br />
**[[5g5l]] – yTF RRN3 in RNA polymerase I<br />
**[[5g5l]] – yTF RRN3 in RNA polymerase I<br />
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**[[5w66]], [[5w65]], [[5w64]], [[5w5y]], [[5oa1]] – yTF RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br />
**[[5w66]], [[5w65]], [[5w64]], [[5w5y]], [[5oa1]] – yTF RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br />
**[[6rwe]], [[6rui]], [[6rql]], [[6rqh]], [[5n61]], [[5n60]], [[5n5z]], [[5n5y]] – yTF RRN3+RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br />
**[[6rwe]], [[6rui]], [[6rql]], [[6rqh]], [[5n61]], [[5n60]], [[5n5z]], [[5n5y]] – yTF RRN3+RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br />
**[[7z0o]] – yTF RRN5+RRN9+RRN10 in RNA polymerase I – Cryo EM<br />
}}
}}


[[Category:Topic Page]]
[[Category:Topic Page]]

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Michal Harel
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