Practical Guide to Homology Modeling: Difference between revisions

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Eric Martz, Juergen Haas, Jaime Prilusky

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 === Prediction of intrinsic disorder ===
-==== MobiDB via UniProt ====
+==== MobiDB ====
-At UniProt.Org, find your protein, then click on “Structure”. At the bottom of this section is usually a link to MobiDB’s report for the query protein. MobiDB is a meta-server: it summarizes predictions from various other servers that use different methods. In 2017, MobiDB changed its output format, and it is rather confusing. You may find [https://www.umass.edu/molvis/workshop/mobidb.htm these instructions helpful]<ref>The [https://www.umass.edu/molvis/workshop/mobidb.htm MobiDB instructions] were designed to supplement Section 18 of [https://www.umass.edu/molvis/workshop/challeng/2018/pps-um18.htm this assignment].</ref>.
+MobiDB is a meta-server: it summarizes disorder predictions from various other servers that use different methods.
-The ''Examples'' above have links to MobiDB.
+*At UniProt.Org, find your protein, then copy its UniProt accession code, something like P04386.
+*Go to [https://mobidb.bio.unipd.it/ MobiDB].
+*Enter your UniProt accession code, such as P04386. Do NOT include for example (GAL4_YEAST) or it will say "not found".
+In 2017, MobiDB changed its output format, and it is rather confusing. There is no color key and the results are poorly explained, if at all. If you know of a better meta-server, please mention it in the discussion page. You may find [https://www.umass.edu/molvis/workshop/mobidb.htm these instructions helpful]<ref>The [https://www.umass.edu/molvis/workshop/mobidb.htm MobiDB instructions] were designed to supplement Section 18 of [https://www.umass.edu/molvis/workshop/challeng/2018/pps-um18.htm this assignment].</ref>.
 ==== FoldIndex ====