Scene authoring tools: Difference between revisions

Karsten Theis (talk | contribs)
Karsten Theis (talk | contribs)
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=='labels' tab==
=='labels' tab==
The first area is the 'all or nothing and halo toggle' area. This provides a button to select all atoms, disselect all atoms (select none), and a checkbox to turn selection halos on or off.
This tab allows you to add labels to atoms that move with the atom as the structure is rotated and moved. It also also you to choose styles for measurements of distances and angles.


The 'mouse click selects' area is similar to the 'mouse click selects' area in the 'selections' tab and allows changing between the 'default' mouse picking style and the 'atom' mouse picking style.  See the 'selections' tab section above for an explanation about the different mouse picking styles.
===mouse click selects===
The 'mouse click selects' area is similar to the 'mouse click selects' area in the 'selections' tab and allows changing between the 'nothing' mouse picking style and the 'atom' mouse picking style.  See the 'selections' tab section above for an explanation about the different mouse picking styles.


===label selected atoms===
The 'label atoms' area is used to label atoms.  First, an atom must be selected.  Next, you choose how the label should look by choosing between entering text, displaying the atom name, the element, the 3-letter residue code, the residue number, and the chain letter of the atom being labeled (you can combine all of these options however you want).  When you are ready to create the label, click on 'set label'. Note that if you have a selection of atoms when you assign a label by clicking 'set label', then each atom in the selection will get a label.  'Clear labels from selection' will clear all the labels from the current selection.  To delete all labels, first 'select all' and then 'clear labels from selection'.
The 'label atoms' area is used to label atoms.  First, an atom must be selected.  Next, you choose how the label should look by choosing between entering text, displaying the atom name, the element, the 3-letter residue code, the residue number, and the chain letter of the atom being labeled (you can combine all of these options however you want).  When you are ready to create the label, click on 'set label'. Note that if you have a selection of atoms when you assign a label by clicking 'set label', then each atom in the selection will get a label.  'Clear labels from selection' will clear all the labels from the current selection.  To delete all labels, first 'select all' and then 'clear labels from selection'.


To change the label properties, you can choose label color, label size, and an optional pointer from the label to the atom.
To change the label properties, you can choose label color, label size, and an optional pointer from the label to the atom.


The following three areas are collapsed by default and may be expanded and collapsed by clicking the +/- near their names:
===measurements===
 
The 'label applet' tab allows setting of a label that will be displayed in the bottom area of the applet.  Its color and size can be chosen.  Use 'set label' to set the label after entering text.  Use 'clear label from applet' to clear the label.  To have an applet label that takes up multiple lines, use the symbol | to create line breaks in your inputted text.  Label color and size can be changed after or before setting a label.
 
The 'measurements' area allows control over the appearance of measurements.  Measurements can be created by a combination of double and single clicking on atoms while in the 'default' mouse picking setting.  Measurements are explained in the 'how to' tab of the ''Scene authoring tools''.  Here in the 'measurements' area, you can control the color, size, and units of the measurements.  Changing the color or the size will affect all existing and future measurements but changing the units will only affect future measurements.  The labels on the measurements can also be turned off or on.
The 'measurements' area allows control over the appearance of measurements.  Measurements can be created by a combination of double and single clicking on atoms while in the 'default' mouse picking setting.  Measurements are explained in the 'how to' tab of the ''Scene authoring tools''.  Here in the 'measurements' area, you can control the color, size, and units of the measurements.  Changing the color or the size will affect all existing and future measurements but changing the units will only affect future measurements.  The labels on the measurements can also be turned off or on.
The 'bonds' area allows control over disulfide and hydrogen bonds.  You can turn disulfide and/or hydrogen bonds on or off for a particular selection and can choose the colors for the bonds.


=='save scene' tab==
=='save scene' tab==

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Eran Hodis, Wkadmin, Joel L. Sussman, Youngsen Jeng, Eric Martz, Angel Herraez, Karsten Theis, Jaime Prilusky, Rachel Butz