6y4c: Difference between revisions

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 ==Structure of galectin-3C in complex with lactose determined by serial crystallography using an XtalTool support==
-<StructureSection load='6y4c' size='340' side='right'caption='[[6y4c]]' scene=''>
+<StructureSection load='6y4c' size='340' side='right'caption='[[6y4c]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y4C OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Y4C FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6y4c]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y4C OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Y4C FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6y4c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y4c OCA], [http://pdbe.org/6y4c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6y4c RCSB], [http://www.ebi.ac.uk/pdbsum/6y4c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6y4c ProSAT]</span></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene></td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LGALS3, MAC2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6y4c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y4c OCA], [http://pdbe.org/6y4c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6y4c RCSB], [http://www.ebi.ac.uk/pdbsum/6y4c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6y4c ProSAT]</span></td></tr>
 </table>
+== Function ==
+[[http://www.uniprot.org/uniprot/LEG3_HUMAN LEG3_HUMAN]] Galactose-specific lectin which binds IgE. May mediate with the alpha-3, beta-1 integrin the stimulation by CSPG4 of endothelial cells migration. Together with DMBT1, required for terminal differentiation of columnar epithelial cells during early embryogenesis (By similarity). In the nucleus: acts as a pre-mRNA splicing factor. Involved in acute inflammatory responses including neutrophil activation and adhesion, chemoattraction of monocytes macrophages, opsonization of apoptotic neutrophils, and activation of mast cells.<ref>PMID:15181153</ref> <ref>PMID:19594635</ref> <ref>PMID:19616076</ref>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Over the last decade, serial crystallography, a method to collect complete diffraction datasets from a large number of microcrystals delivered and exposed to an X-ray beam in random orientations at room temperature, has been successfully implemented at X-ray free-electron lasers and synchrotron radiation facility beamlines. This development relies on a growing variety of sample presentation methods, including different fixed target supports, injection methods using gas-dynamic virtual-nozzle injectors and high-viscosity extrusion injectors, and acoustic levitation of droplets, each with unique requirements. In comparison with X-ray free-electron lasers, increased beam time availability makes synchrotron facilities very attractive to perform serial synchrotron X-ray crystallography (SSX) experiments. Within this work, the possibilities to perform SSX at BioMAX, the first macromolecular crystallography beamline at MAX IV Laboratory in Lund, Sweden, are described, together with case studies from the SSX user program: an implementation of a high-viscosity extrusion injector to perform room temperature serial crystallography at BioMAX using two solid supports - silicon nitride membranes (Silson, UK) and XtalTool (Jena Bioscience, Germany). Future perspectives for the dedicated serial crystallography beamline MicroMAX at MAX IV Laboratory, which will provide parallel and intense micrometre-sized X-ray beams, are discussed.
+Current status and future opportunities for serial crystallography at MAX IV Laboratory.,Shilova A, Lebrette H, Aurelius O, Nan J, Welin M, Kovacic R, Ghosh S, Safari C, Friel RJ, Milas M, Matej Z, Hogbom M, Branden G, Kloos M, Shoeman RL, Doak B, Ursby T, Hakansson M, Logan DT, Mueller U J Synchrotron Radiat. 2020 Sep 1;27(Pt 5):1095-1102. doi:, 10.1107/S1600577520008735. Epub 2020 Aug 21. PMID:32876583<ref>PMID:32876583</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 6y4c" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Galectin 3D structures|Galectin 3D structures]]
+== References ==
+<references/>
 __TOC__
 </StructureSection>
+[[Category: Human]]
 [[Category: Large Structures]]
-[[Category: Hakansson M]]
+[[Category: Hakansson, M]]
-[[Category: Kovacic R]]
+[[Category: Kovacic, R]]
-[[Category: Logan DT]]
+[[Category: Logan, D T]]
-[[Category: Mueller U]]
+[[Category: Mueller, U]]
-[[Category: Shilova A]]
+[[Category: Shilova, A]]
-[[Category: Welin M]]
+[[Category: Welin, M]]
+[[Category: Galectin]]
+[[Category: Solid support]]
+[[Category: Sugar binding protein]]
+[[Category: Synchrotron serial crystallography]]
+[[Category: Xtaltool]]