6ib7: Difference between revisions
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<StructureSection load='6ib7' size='340' side='right'caption='[[6ib7]], [[Resolution|resolution]] 2.25Å' scene=''> | <StructureSection load='6ib7' size='340' side='right'caption='[[6ib7]], [[Resolution|resolution]] 2.25Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[6ib7]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[6ib7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IB7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IB7 FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.245Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ib7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ib7 OCA], [https://pdbe.org/6ib7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ib7 RCSB], [https://www.ebi.ac.uk/pdbsum/6ib7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ib7 ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/SUHB_ECOLI SUHB_ECOLI] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Escherichia coli]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Huang | [[Category: Huang YH]] | ||
[[Category: Loll | [[Category: Loll B]] | ||
[[Category: Wahl | [[Category: Wahl MC]] | ||
Latest revision as of 14:50, 24 January 2024
Structure of wild type SuhBStructure of wild type SuhB
Structural highlights
FunctionPublication Abstract from PubMedRibosomal RNA synthesis in Escherichia coli involves a transcription complex, in which RNA polymerase is modified by a signal element on the transcript, Nus factors A, B, E and G, ribosomal protein S4 and inositol mono-phosphatase SuhB. This complex is resistant to rho-dependent termination and facilitates ribosomal RNA folding, maturation and subunit assembly. The functional contributions of SuhB and their structural bases are presently unclear. We show that SuhB directly binds the RNA signal element and the C-terminal AR2 domain of NusA, and we delineate the atomic basis of the latter interaction by macromolecular crystallography. SuhB recruitment to a ribosomal RNA transcription complex depends on the RNA signal element but not on the NusA AR2 domain. SuhB in turn is required for stable integration of the NusB/E dimer into the complex. In vitro transcription assays revealed that SuhB is crucial for delaying or suppressing rho-dependent termination, that SuhB also can reduce intrinsic termination, and that SuhB-AR2 contacts contribute to these effects. Together, our results reveal functions of SuhB during ribosomal RNA synthesis and delineate some of the underlying molecular interactions. Structural basis for the function of SuhB as a transcription factor in ribosomal RNA synthesis.,Huang YH, Said N, Loll B, Wahl MC Nucleic Acids Res. 2019 Jul 9;47(12):6488-6503. doi: 10.1093/nar/gkz290. PMID:31020314[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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