DNA polymerase: Difference between revisions

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</StructureSection>
== 3D Structures of DNA polymerase ==
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|


*DNA polymerase I
**[[1taq]] – TaDpo I - ''Thermus aquaticus''<br />
**[[1jxe]] – TaDpo I Stoffel fragment<br />
**[[1ktq]] - TaDpo I klenow fragment<br />
**[[5ktq]] – TaDpo I + nucleotide<br />
**[[5szt]], [[5e41]], [[6q4v]], [[6q4u]], [[6fbi]], [[6fbh]], [[6fbg]], [[6fbf]], [[6fbe]], [[6fbd]], [[6fbc]], [[5z3n]], [[5yth]], [[5ytg]], [[5ytf]], [[5yte]], [[5ytd]], [[5ytc]] – TaDpo I + DNA + nucleotide derivative<br />
**[[5nkl]] – TaDpo I + DNA + pyridine derivative + pyrrol derivative<br />
**[[5o7t]] – TaDpo I (mutant) + DNA + CTP derivative<br />
**[[5oxj]] – TaDpo I + DNA + GMP derivative + imidazole derivative<br />
**[[3ojs]], [[3oju]], [[1tau]], [[4dle]], [[4dlg]], [[4elt]], [[4elu]], [[4elv]] - TaDpo I + DNA<br />
**[[4flt]], [[4flu]], [[4flv]], [[4flw]], [[4flx]], [[4fly]], [[4flz]], [[4fm0]], [[4fm1]], [[4fm2]] – Dpo I + DNA – ''Pyrococcus abyssi''<br />
**[[1s5j]] – SsDpo I - ''Sulfolobus solfataricus''<br />
**[[6dsy]], [[6dsx]], [[6dsw]], [[6dsv]], [[6dsu]] - GsDpo I + DNA - ''Geobacillus stearothermophilus''<br />
**[[6mu5]], [[6mu4]] - GsDpo I + DNA + nucleotide derivative <br />
**[[3eyz]] - GsDpo I (mutant) + DNA <br />
**[[3ez5]] - GsDpo I (mutant) + DNA + nucleotide <br />
**[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – ''Geobacillus kaustophilus''<br />
*DNA polymerase I klenow fragment
**[[2kzz]], [[1d8y]], [[2kzm]] – EcDpo I - ''Escherichia coli''<br />
**[[1qsl]] - EcDpo I  + DNA<br />
**[[1kfd]], [[1dpi]] - EcDpo I  + nucleotide<br />
**[[1d9d]], [[1d9f]], [[2kfn]] - EcDpo I  + DNA + nucleotide<br />
**[[1ktq]] - TaDpo I <br />
**[[3po4]], [[3po5]], [[3rtv]], [[3sv3]], [[3sv4]], [[3syz]], [[3sz2]], [[4c8k]], [[4c8l]], [[4c8m]], [[4c8n]], [[4c8o]], [[4cch]] - TaDpo I  + DNA<br />
**[[4bwm]], [[4bwj]] - TaDpo I  + DNA + RNA<br />
**[[2xo7]], [[3hp6]], [[3hpo]], [[2hhq]], [[2hhs]], [[2hht]], [[2hhu]], [[2hhv]], [[2hhw]], [[2hhx]], [[2hvh]], [[2hvi]], [[2hw3]], [[1xc9]], [[1ua0]], [[1ua1]], [[1njw]], [[1njx]], [[1njy]], [[1njz]], [[1nk0]], [[1nk4]], [[1nk5]], [[1nk6]], [[1nk7]], [[1nk8]], [[1nk9]], [[1nkb]], [[1nkc]], [[1nke]], [[1l3s]], [[2bdp]], [[4bdp]], [[2xy5]], [[2xy6]], [[2xy7]], [[2y1i]], [[2y1j]], [[3tan]], [[3tap]], [[3taq]], [[3tar]], [[3thv]], [[4b9l]], [[4b9m]], [[4b9n]], [[4b9s]], [[4b9t]], [[4b9u]], [[4b9v]] - GsDpo I + DNA<br />
**[[4dsi]], [[4dsj]], [[4dsk]], [[4dsl]], [[4dwi]] - GsDpo I (mutant) + DNA<br />
**[[3ht3]], [[1u45]], [[1u47]], [[1u48]], [[1u49]], [[1u4b]], [[1l3t]], [[1l3u]], [[1l3v]], [[1l5u]], [[1lv5]], [[3bdp]], [[3ti0]], [[4o0i]], [[4uqg]] - GsDpo I  + DNA + nucleotide<br />
*DNA polymerase II
**[[3maq]], [[3k57]], [[3k58]], [[3k59]], [[3k5l]], [[3k5m]] - EcDpo II (mutant) + DNA + nucleotide <br />
**[[3k5n]] - EcDpo II (mutant) + DNA<br />
**[[3k5o]], [[1q8i]] - EcDpo II (mutant) <br />
**[[3o59]] - PhDpo II large subunit]] - ''Pyrococcus horikoshii''<br />
**[[2kxe]] - PhDpo II small subunit<br />
**[[5ijl]] - PaDpo II large subunit <br />
**[[5ihe]] - PaDpo II small subunit <br />
**[[6hmf]] - PaDpo II small subunit (mutant)<br />
**[[6hms]] - PaDpo II small+large subunits + DNA – Cryo EM <br />
*DNA polymerase III subunit α
**[[2hnh]], [[2hqa]] - EcDpo III subunit α catalytic fragment<br />
**[[2hpi]], [[2hpm]] - TaDpo III α subunit<br />
**[[3e0d]] - TaDpo III α subunit + DNA<br />
**[[3f2b]], [[3f2c]], [[3f2d]], [[4iqj]] – GkDpo III α subunit + DNA + nucleotide <br />
**[[5m1s]], [[5fkw]], [[5fkv]], [[5fku]] - EcDpo III α(mutant)β,ε subunits + DNA – Cryo EM<br />
**[[1ok7]] - EcDpo III residues 1-366 + EcDpo IV C-terminal<br />
**[[1zd7]], [[1zde]], [[3nzm]], [[5ol5]], [[5ol1]] - SyDpo III α subunit – ''Synechocystis''<br />
**[[4gig]] - SyDpo III α subunit (mutant) <br />
**[[2keq]], [[4kl5]], [[4kl6]] - NpDpo III α subunit – ''Nostoc punctiforme''<br />
**[[4lx3]], [[4qfq]] - NpDpo III α subunit + nucleic acid binding tRNA/helicase<br />
**[[5lew]] - MtPol III α subunit – ''Mycobacterrium tuberculosis''<br />
*DNA polymerase III subunit β or sliding clamp
**[[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit β<br />
**[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit β (mutant) <br />
**[[2avt]] - Dpo III β subunit – ''Streptococcus pyogenes''<br />
**[[2awa]] - Dpo III β subunit – ''Streptococcus pneumoniae''<br />
**[[4trt]] – DrDpo III β subunit – ''Deinococcus radiodurans''<br />
**[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br />
**[[1vpk]] - TmDpo III β subunit<br />
**[[3t0p]] - Dpo III β subunit – ''Eubacterium rectale''<br />
**[[6ap4]] - Dpo III β subunit – ''Acinetobacter baumannii''<br />
**[[6amq]] - Dpo III β subunit – ''Enterobacter cloacae''<br />
**[[5wyp]], [[5wce]] - Dpo III β subunit – ''Caulobacter crescentus''<br />
**[[5w7z]] - RcDpo III β subunit – ''Rickettsia conorii''<br />
**[[6man]] - Dpo III  subunit – Rickettsia bellii<br />
**[[6d46]] - RtDpo III  subunit – Rickettsia typhi<br />
**[[1jqj]], [[1jql]] - EcDpo III subunit β,γ(mutant) <br />
**[[4tr6]] - Pol III β subunit – ''Bacillus subtilis''<br />
**[[3p16]], [[3rb9]], [[4tr7]] - MtPol III β subunit <br />
**[[4tr8]], [[6ams]] - PaPol III β subunit – ''Pseudomonas aeruginosa''<br />
**[[4s3i]], [[4rki]] - HpPol III β subunit – ''Helicobacter pylori''<br />
*DNA polymerase III subunit beta or sliding clamp complex
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]] - EcDpo III subunit  + inhibitor<br />
**[[3bep]] - EcDpo III subunit  + DNA<br />
**[[5x06]] - EcDpo III subunit  + DnaA regulatory inactivator<br />
**[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]], [[6fvl]] - EcDpo III  subunit + polypeptide<br />
**[[6fvm]] - EcDpo III  subunit (mutant) + P7 peptide<br />
**[[5g4q]], [[5g48]], [[5fxt]], [[5fve]] - HpPol III  subunit + NSAID drug <br />
**[[5frq]] - HpPol III  subunit + DNA ligase peptide<br />
**[[5dai]] - TkPol III  subunit + FEN-1 peptide - Thermococcus kodakarensis <br />
**[[5ah4]], [[5ah2]], [[5agv]], [[5agu]] – MsPol III  subunit + gricelimycin – Mycobacterium smegmatis<br />
**[[6drt]] – T4Dpo III  subunit + polypeptide - Enterobacteria phage T4<br />
**[[6dj8]] – Dpo III  subunit + polypeptide – Borrelia burgdorferi<br />
**[[6fvo]], [[6fvn]] - MtPol III  subunit + P7 peptide<br />
**[[4tsz]] - PaPol III  subunit + peptide<br />
**[[6djk]] - RtDpo III  subunit + polypeptide <br />
**[[6dm6]] - RcPol III  subunit + peptide<br />
*DNA polymerase III subunit γ
**[[1njf]], [[1njg]] - EcDpo III subunit γ  N-terminal domains 1-2<br />
**[[2gno]] - TmDpo III γ subunit<br />
**[[1xxh]], [[1jr3]] - EcDpo III subunit γ,δ,δ’ <br />
**[[1xxi]] - EcDpo III subunit γ,δ,δ’ + nucleotide<br />
*DNA polymerase III subunit δ
**[[1a5t]] - EcDpo III subunit δ’ <br />
**[[1xxh]], [[1jr3]] - EcDpo III subunit γ,δ,δ’ <br />
**[[1xxi]] - EcDpo III subunit γ,δ,δ’ + nucleotide<br />
**[[3glh]] - EcDpo III subunit δ,δ’,τ <br />
**[[3glf]] - EcDpo III subunit δ,δ’,τ + DNA<br />
**[[3gli]] - EcDpo III subunit δ,δ’,τ,ξ + DNA<br />
*DNA polymerase III subunit ε
**[[2gui]] – EcDpo III subunit ε N-terminal<br />
**[[1j53]], [[1j54]] - EcDpo III subunit ε N-terminal exonuclease domain<br />
**[[2ido]] - EcDpo III subunit ε + HOT protein<br />
**[[4gx8]] - EcDpo III ε subunit/ EcDpo III α subunit<br />
**[[2xy8]] - EcDpo III subunit ε,θ<br />
*DNA polymerase III subunit τ
**[[2aya]] - EcDpo III subunit τ <br />
**[[3glh]] - EcDpo III subunit δ,δ’,τ <br />
**[[3glf]] - EcDpo III subunit δ,δ’,τ + DNA<br />
*DNA polymerase III subunit xi
**[[3gli]] - EcDpo III subunit δ,δ’,τ,ξ + DNA<br />
*DNA polymerase III subunit θ
**[[2xy8]] - EcDpo III subunit ε,θ<br />
**[[2axd]], [[2ae9]], [[1du2]] - EcDpo III subunit θ - NMR<br />
*DNA polymerase III subunit χ
**[[1em8]] - EcDpo III subunit ϕ,χ<br />
**[[3sxu]] - EcDpo III subunit ϕ,χ + peptide<br />
*DNA polymerase III subunit φ
**[[1em8]] - EcDpo III subunit ϕ,χ<br />
**[[3sxu]] - EcDpo III subunit ϕ,χ + peptide<br />
*DNA polymerase IV
**[[4ir1]], [[4ir9]], [[4irc]], [[4ird]], [[4irk]], [[5zlv]], [[5yye]], [[5yyd]], [[5yv3]], [[5yv2]], [[5yv1]], [[5yv0]], [[5yuz]], [[5yuy]], [[5yux]], [[5yuw]], [[5yuv]], [[5yuu]], [[5yut]], [[5yus]], [[5yur]] - EcPol IV + DNA<br />
**[[4r8u]], [[5c5j]], [[4q45]], [[4q44]], [[4q43]], [[6ig1]] - EcPol IV + DNA + nucleotide<br />
**[[2rdi]] - SsPol IV <br />
**[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsPol IV (mutant) + DNA + nucleotide <br />
**[[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4tqr]], [[4tqs]] - SsPol IV + DNA + nucleotide<br />
**[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]], [[4rzr]] - SsPol IV + DNA<br />
**[[2xca]], [[2xcp]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]], [[5edw]], [[4ruc]], [[4rua]] - SsPol IV + DNA + nucleotide<br />
**[[3fds]] – SsPol IV + PCNA B + PCNA C<br />
**[[3bq2]], [[3bq0]] – SaPol IV + DNA – ''Sulfolobus acidocaldarius''<br />
**[[3bq1]], [[4f4w]], [[4f4x]], [[4f4y]], [[4f4z]], [[4f50]] - SaPol IV + DNA + nucleotide<br />
**[[4nlg]] - SaPol IV (mutant) + DNA<br />
**[[4dez]] – MsPol IV <br />
*DNA polymerase from enterobacteria phage T7
**[[1zyq]], [[1x9m]], [[1x9s]], [[1x9w]], [[1tk0]], [[1skr]], [[1sks]], [[1skw]], [[1sl0]], [[1sl1]], [[1sl2]], [[1t7p]], [[6n2w]] - T7Dpo (mutant) + thioredoxin + DNA + nucleotide<br />
**[[1t8e]], [[1tk5]], [[1tk8]], [[1tkd]] - T7Dpo + thioredoxin + DNA + nucleotide<br />
**[[6n9x]], [[6n9w]], [[6n9v]] - T7Dpo + Gp4 + DNA + nucleotide derivative<br />
**[[6n9u]] - T7Dpo + Gp4 + DNA + RNA + nucleotide derivative<br />
**[[5ikn]] - T7Dpo + thioredoxin + DNA primase/helicase<br />
*DNA polymerase
**[[2gv9]] – Dpo – Herpes simplex virus<br />
**[[5n2g]], [[5n2e]] – VvDpo – Vaccinia virus<br />
**[[5n2h]] – VvDpo (mutant) <br />
**[[5mdn]] – Dpo – ''Pyrobaculum calidifontis''<br />
**[[1bgx]] – TaDpo + TP7 antibody<br />
**[[1ih7]] – EpDpo]] - Enterobacteria phage RB69<br />
**[[1waf]], [[1waj]] - EpDpo  + nucleotide<br />
**[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br />
**[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br />
**[[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]], [[5gnq]] - EpDpo (mutant) + DNA + nucleotide<br />
**[[1clq]], [[3iuq]] - EpDpo + DNA + nucleotide<br />
**[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br />
**[[2atq]] – EpDpo + GP32<br />
**[[1noy]] – T4Dpo + DNA - Enterobacteria phage T4<br />
**[[1noz]] – T4Dpo residues 1-388<br />
**[[2ex3]] – BpDpo (mutant) + DNA terminal protein – Bacillus phage 29<br />
**[[2py5]], [[2pzs]], [[1xhz]], [[1xi1]] – BpDpo (mutant) + DNA <br />
**[[2pyj]], [[2pyl]] - BpDpo (mutant) + DNA + nucleotide<br />
**[[1xhx]] - BpDpo (mutant) <br />
**[[3a2f]] - PfDpo + PCNA - ''Pyrococcus furiosus''<br />
**[[2jgu]], [[4ahc]] – PfDpo<br />
**[[4ail]] – PfDpo + DNA<br />
**[[1tgo]] - TgDpo – ''Thermococcus gorgonarius''<br />
**[[2vwj]], [[2xhb]] – TgDpo (mutant) + DNA <br />
**[[2vwk]] - TgDpo (mutant) <br />
**[[1wn7]], [[1wns]], [[5vu5]] – TkDpo B <br />
**[[5vu9]], [[5vu8]], [[5vu7]], [[5vu6]], [[5omf]] - TkDpo + DNA<br />
**[[4k8z]] - TkDpo (mutant) + DNA<br />
**[[6q4t]] - TkDpo (mutant) + DNA + nucleotide derivative<br />
**[[1qht]] - ThDpo (mutant) – ''Thermococcus''<br />
**[[4k8x]], [[5omv]], [[5omq]] - ThDpo (mutant) + DNA<br />
**[[4yfu]] - Dpo (mutant) + DNA - ''Bacillus''<br />
**[[1d5a]] – DeDpo <br />
*DNA polymerase α
**[[4e2i]] – hDpo α subunit β + large T antigen – human<br />
**[[4y97]] - hDpo α catalytic+B subunits  <br />
**[[5iud]] - hDpo α catalytic subunit + DNA  <br />
**[[6as7]] - hDpo α catalytic subunit (mutant) + DNA  <br />
**[[4bpx]] - hDpo α catalytic subunit + DNA primase small subunit <br />
**[[5exr]] - hDpo α catalytic+B subunits + DNA primase small+large subunits <br />
**[[4q5v]] - hDpo α catalytic subunit + DNA + RNA + aphidicolin <br />
**[[4qcl]] - hDpo α catalytic subunit + DNA + RNA + nucleotide <br />
**[[2keb]] - hDpo αB - NMR <br />
**[[1n5g]], [[1k0p]], [[1k18]] - hDpo α zinc finger domain – NMR<br />
*DNA polymerase β
**[[4p4m]], [[4p4o]], [[4p4p]] - Dpo β + DNA + nucleotide – ''Leishmania infantum''<br />
**[[4ppx]] - hDpo β + spiroiminohydantoin + DNA<br />
**[[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icu]], [[7icv]], [[8icb]], [[8icc]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]], [[7icg]], [[7ich]], [[7ick]], [[7icn]], [[7ico]], [[7icq]], [[7ics]], [[1zqe]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4lvs]], [[4klq]], [[4kls]], [[4klt]], [[4klu]], [[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]], [[5wo0]], [[5wnz]], [[5wny]], [[5wnx]], [[5vs4]], [[5vs3]], [[5vs2]], [[5vs1]], [[5vs0]], [[5vrz]], [[5vry]], [[5vrx]], [[5vrw]], [[5vez]], [[5v1r]], [[5v1p]], [[5v1o]], [[5v1n]], [[5v1j]], [[5v1i]], [[5v1h]], [[5v1g]], [[5v1f]], [[5ugp]], [[5ugo]], [[5ugn]], [[5u9h]], [[5u8i]], [[5u8h]], [[5u8g]], [[5u2t]], [[5u2s]], [[5u2r]], [[5tzv]], [[5tbc]], [[5tbb]], [[5tba]], [[5tb9]], [[5tb8]], [[5j2k]], [[5j2j]], [[5j2i]], [[5j2h]], [[5j2g]], [[5j2f]], [[5j2e]], [[5j2d]], [[5j2c]], [[5j2b]], [[5j2a]], [[5j29]], [[5j0y]], [[5j0x]], [[5j0w]], [[5j0u]], [[5j0t]], [[5j0s]], [[5j0r]], [[5j0q]], [[5j0p]], [[5j0o]], [[5dbc]], [[5dbb]], [[5dba]], [[5db9]], [[5db8]], [[5db7]], [[5db6]], [[4pgy]], [[7ice]], [[7icf]], [[7icg]], [[7ich]], [[7ici]], [[7icj]], [[7ick]], [[7icl]], [[7icm]], [[7icn]], [[7ico]], [[7icp]], [[7icq]], [[7icr]], [[7ics]], [[7ict]], [[7icu]], [[7icv]], [[8ica]], [[8icb]], [[8icc]] [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icy]], [[8icz]], [[9ica]], [[9icb]], [[9icc]] [[9ice]], [[9icf]], [[9icg]], [[9ich]], [[9ici]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icn]], [[9ico]], [[9icp]], [[9icq]], [[9icr]], [[9ics]], [[9ict]], [[9icu]], [[9icv]], [[9icw]], [[9icx]], [[9icy]], [[6g2q]] - hDpo β + DNA<br />
**[[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[1zjn]], [[1mq2]], [[1mq3]], [[1bpy]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icz]], [[9ice]], [[9icg]], [[9ich]], [[9ici]], [[9icq]], [[9ics]], [[9ict]], [[9icu]], [[9icv]], [[9icr]], [[9icn]], [[9ico]], [[8icy]], [[9ica]], [[9icb]], [[9icc]], [[9icf]], [[4do9]], [[4doa]], [[4dob]], [[4doc]], [[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]], [[5eoz]], [[5bpc]], [[5bom]], [[5bol]], [[4z6f]], [[4z6e]], [[4z6d]], [[4z6c]], [[4yn4]], [[4ymo]], [[4ymn]], [[4ymm]], [[4rt3]], [[4rt2]], [[4rq8]], [[4rq7]], [[4rq6]], [[4rq5]], [[4rq4]], [[4rq3]], [[4rq2]], [[4rq1]], [[4rq0]], [[4rpz]], [[4rpy]], [[4rpx]], [[4php]], [[4phe]], [[4ph5]] - hDpo β + DNA + nucleotide<br />
**[[2p66]], [[4f5n]] - hDpo β + DNA + nucleotide analog<br />
**[[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]], [[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6dic]], [[6btf]], [[6bte]] - hDpo β (mutant) + DNA + nucleotide analog<br />
**[[3ogu]], [[4jwm]], [[4jwn]], [[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]], [[4r63]], [[4r64]], [[4r65]], [[4r66]] - hDpo β (mutant) + DNA<br />
**[[5hhi]], [[5hhh]] - hDpo β + DNA + azanide derivative<br />
**[[2v6z]] - hDpo β N-terminal (mutant)]] - NMR<br />
**[[3k75]], [[3lqc]] - hDpo β + DNA repair protein XRCC1<br />
**[[1rpl]], [[2bpc]], [[1bpe]], [[1bpb]], [[1bpd]], [[3uxn]] - rDpo β – rat<br />
**[[2van]], [[1jn3]], [[3uxo]], [[3v7l]]- rDpo β (mutant) <br />
**[[1dk2]], [[1dk3]], [[1bno]], [[1bnp]] - rDpo β N-terminal – NMR<br />
**[[1nom]] - rDpo β C-terminal<br />
**[[1huo]], [[1huz]], [[3v7j]] - rDpo β + DNA<br />
**[[3uxp]], [[3v72]], [[3v7k]] - rDpo β (mutant) + DNA    <br /> 
**[[1bpe]] - rDpo β + nucleotide<br />
**[[2bpf]], [[2bpg]] - rDpo β + DNA + nucleotide<br />
**[[3au2]] – TtDpo β + GTP – ''Thermus thermophilus''<br />
**[[3b0x]], [[3b0y]] – TtDpo β (mutant) + GTP<br />
**[[3au6]], [[3auo]] – TtDpo β + GTP + DNA<br />β
*DNA polymerase γ
**[[3ikm]] - hDpo γ1+ γ2 <br />
**[[3ikl]], [[2g4c]] - hDpo γ2<br />
**[[2jw5]] - hDpo λ BRCT domain<br />
**[[1xsl]] - hDpo λ catalytic domain<br />
**[[1nzp]] - hDpo λ lyase domain - NMR<br />
**[[3pmn]], [[3pnc]], [[3mda]], [[2gws]], [[2bcq]], [[2bcr]], [[2bcs]], [[2bcu]], [[2bcv]], [[1xsp]], [[1rzt]] - hDpo λ + DNA<br />
**[[3mgh]], [[3c5f]], [[3c5g]], [[2pfn]] - hDpo λ (mutant) + DNA<br />
**[[3pml]], [[3mdc]], [[1xsn]] - hDpo λ + DNA + nucleotide<br />
**[[4k4g]], [[4k4h]], [[4k4i]] - hDpo λ + DNA + nucleotide analog<br />
**[[3mgi]], [[3hw8]], [[3hwt]], [[3hx0]], [[2pfo]], [[2pfp]], [[2pfq]] - hDpo λ (mutant) + DNA + nucleotide<br />
*DNA polymerase δ
**[[3e0j]] - hDpo δ2+ δ3<br />
**[[3upq]], [[3uq0]], [[3uq2]] - hDpo δ (mutant) + DNA<br />
**[[4fo6]] - hDpo δ (mutant) + DNA + nucleotide analog<br />
*DNA polymerase ε
**[[5vbn]] - hDpo ε subunits A+2 <br />
*DNA polymerase ζ
**[[3abd]], [[3abe]] - hDpo ζ catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7<br />
**[[6ekm]], [[6bi7]], [[6bcd]], [[6bc8]] - hDpo ζ catalytic subunit + MAD2B<br />
**[[3vu7]], [[4gk0]] - hDpo ζ catalytic subunit + DNA repair protein Rev1 + MAD2B<br />
**[[4fjo]], [[4gk5]] - hDpo κ + hDpo ζ catalytic subunit + DNA repair protein Rev1 + MAD2B<br />
*DNA polymerase η
**[[2i5o]] - hDpo η ubiquitin-binding zinc finger – NMR<br />
**[[2lsj]], [[2lsi]] - hDpo η + DNA repair protein Rev1<br />
**[[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[4x0p]], [[4x0q]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[3si8]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[5l9x]], [[5l1l]], [[5l1k]], [[5l1j]], [[5l1i]], [[5kg7]], [[5kg6]], [[5kg5]], [[5kg4]], [[5kg3]], [[5kg2]], [[5kg1]], [[5kg0]], [[5kfz]], [[5kfy]], [[5kfx]], [[5kfw]], [[5kfv]], [[5kfu]], [[5kft]], [[5kfs]], [[5kfr]], [[5kfq]], [[5kfp]], [[5kfo]], [[5kfn]], [[5kfm]], [[5kfl]], [[5kfk]], [[5kfj]], [[5kfi]], [[5kfh]], [[5kfg]], [[5kff]], [[5kfe]], [[5kfd]], [[5kfc]], [[5kfb]], [[5kfa]], [[5jum]], [[5f9n]], [[5f9l]], [[5ewg]], [[5ewf]], [[5ewe]], [[5dqi]], [[5dqh]], [[5dqg]], [[5dlg]], [[5dlf]], [[5dgb]], [[5dga]], [[5dg9]], [[5dg8]], [[5dg7]], [[4yr3]], [[4yr2]], [[4yr0]], [[4yqw]], [[4yp3]], [[4ru9]], [[6mxo]], [[6m7v]], [[6m7u]], [[6m7t]], [[6m7p]], [[6m7o]], [[6d0z]], [[6d0m]] - hDpo η + DNA + nucleotide<br />
**[[5aga]] - hDpo η + nucleotide<br />
*DNA polymerase ι
**[[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]], [[4eyh]], [[4eyi]], [[3g6v]], [[3g6x]], [[3g6y]], [[5ulx]], [[5ulw]], [[5kt7]], [[5kt6]], [[5kt5]], [[5kt4]], [[5kt3]], [[5kt2]] - hDpo ι + DNA + nucleotide<br />
**[[3ngd]], [[3osn]], [[3h40]], [[5ulx]], [[5ulw]] - hDpo ι catalytic fragment + DNA <br />
**[[2ktf]] - hDpo ι + ubiquitin<br />
**[[2l0f]], [[2l0g]] - hDpo ι + ubiquitin – NMR<br />
**[[2khu]] - hDpo ι ubiquitin binding motif – NMR<br />
**[[2khw]] - hDpo ι ubiquitin binding motif + ubiquitin – NMR<br />
**[[2kwu]], [[2kwv]] - mDpo ι C-terminal + ubiquitin - NMR<br />
**[[3ai4]] - mDpo ι/yEGFP<br />
*DNA polymerase κ
**[[1t94]] - hDpo κ<br />
**[[3in5]] - hDpo κ + DNA<br />
**[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]], [[6cst]], [[6bs1]], [[6brx]] - hDpo κ + DNA + nucleotide<br />
**[[2lsi]] - hDpo κ peptide + hRev1<br />
**[[2lsk]] - mDpo κ + DNA repair protein Rev1<br />
*DNA polymerase λ
**[[5cb1]] – hDpo <br />
**[[5iio]], [[5iin]], [[5iim]], [[5iil]], [[5iik]], [[5iij]], [[5iii]], [[5ddm]] – hDpo + DNA<br />
**[[5cp2]] – hDpo (mutant) + DNA<br />
**[[5dkw]], [[5ca7]], [[4xus]], [[4xrh]], [[4xq8]], [[4xa5]], [[4x5v]] – hDpo + DNA + nucleotide<br />
**[[5cwr]], [[5cr0]], [[5cj7]], [[5chg]] – hDpo (mutant) + DNA + nucleotide<br />
**[[5ddy]] – hDpo + nucleotide<br />
*DNA polymerase μ
**[[2htf]], [[2dun]] - hDpo μ BRCT domain – NMR<br />
**[[5tyx]], [[5tyw]], [[5tyv]], [[5tyu]], [[5tyg]], [[5tyf]], [[5tye]], [[5tyd]], [[5tyc]], [[5tyb]], [[5txz]], [[5txx]], [[5tws]], [[5twr]], [[5twq]], [[5twp]] - hDpo  residues 132-494 + DNA <br />
**[[4yd2]], [[4ycx]] - hDpo  residues 132-494 (mutant) + DNA <br />
**[[6ipn]], [[6ipm]], [[6ipl]], [[6ipk]], [[6ipj]], [[6ipi]], [[6iph]] - hDpo  residues 132-397 (mutant) + nucleotide derivative<br />
**[[4yd1]], [[6ipg]], [[6ipf]], [[6ipe]], [[6ipd]] - hDpo  residues 132-494 (mutant) + DNA + nucleotide derivative<br />
**[[2ihm]] - mDpo μ catalytic domain + DNA – mouse<br />
*DNA polymerase ν
**[[4xvi]], [[4xvk]], [[4xvl]], [[4xvm]] – hDpo ν catalytic domain + DNA<br />
*DNA polymerase χ or repair DNA polymerase chi
**[[2m2t]] – AsfvDpo X – African swine fever virus – NMR<br />
**[[2m2u]], [[2m2v]] – AsfvDpo X + nucleotide – NMR<br />
**[[2m2w]] – AsfvDpo X + nucleotide + DNA – NMR<br />
**[[5xma]], [[5xm9]], [[5xm8]] – AsfvDpo X + DNA<br />
**[[2w9m]] – DrDpo X
*DNA polymerase θ
**[[5a9j]] – hDpo helicase domain<br />
**[[5a9f]] – hDpo helicase domain + nucleotide<br />
*DNA polymerase from yeast
**[[3oiq]] - yDpo  + cell division control protein 13 <br />
**[[3flo]], [[3lgb]] - yDpo  subunits A,B<br />
**[[4b08]], [[4fvm]] - yDpo  subunit A<br />
**[[4fxd]], [[4fyd]] - yDpo  subunit A + RNA + DNA<br />
**[[5oki]] - yDpo  subunit A + DCC1 + chromosome fidelity protein<br />
**[[3iay]] - yDpo  catalytic subunit + DNA<br />
**[[6hv8]] - yDpo II  subunit A+B – Cryo EM<br />
**[[3oha]], [[3ohb]], [[3mfh]] - yDpo  (mutant) + DNA<br />
**[[6g0a]], [[6fwk]] - yDpo II  subunit A (mutant) + DNA + nucleotide derivative<br />
**[[6i8a]], [[6qib]] - yDpo II  subunit A + DNA + nucleotide <br />
**[[3mfi]], [[4m8o]] - yDpo  (mutant) + DNA + nucleotide <br />
**[[6hv9]] - yDpo II  subunit A+B + CMG + DNA + nucleotide – Cryo EM<br />
**[[2r8j]], [[2r8k]], [[4ptf]] - yDpo  catalytic domain + DNA + nucleotide <br />
**[[2xgp]], [[2xgq]], [[2wtf]] - yDpo  + DNA<br />
**[[5y27]], [[5y26]] - Dpo subunit D + transcription factor – fission yeast<br />
**[[1jih]], [[5vtp]] – yDpo  catalytic domain<br />
**[[3bjy]], [[2aq4]] – yRev1 catalytic domain + DNA + nucleotide<br />
*DNA polymerase Rev1
**[[3gqc ]] – hRev1 + DNA + nucleotide<br />
**[[2ebw]] – hRev1 BRCT domain – NMR<br />
**[[3bjy]], [[2aq4]] – yRev1 catalytic domain + DNA + nucleotide<br />
**[[2lsi]] - hDpo  peptide + hRev1<br />
**[[4fjo]], [[4gk5]] - hDpo  + hDpo   catalytic subunit + Rev1 + MAD2B<br />
**[[2lsj]], [[2lsi]] - hDpo  + Rev1<br />
**[[2lsk]] - mDpo  + Rev1<br />
*Terminal deoxynucleotidyl transferase
**[[2coe]] – TdT BRCT domain – NMR<br />
**[[1jms]] – mTdT catalytic domain + Mg <br / >
*Terminal deoxynucleotidyl transferase binary complex
**[[4iqt]], [[4iqu]], [[4iqv]], [[4iqw]] – mTdT catalytic domain + inhibitor <br / >
**[[4i2i]] – mTdT catalytic domain + Mg + Zn + adenosine-pentaphosphate<br / >
**[[4i2j]] – mTdT catalytic domain + CTP + Zn<br / >
**[[1kej]] – mTdT catalytic domain + ATP derivative + Co <br / >
**[[4i2d]] – mTdT catalytic domain + ATP derivative + Mg <br / >
**[[4i29]] – mTdT catalytic domain + AMP derivative + Mn <br / >
**[[4i2b]] – mTdT catalytic domain + AMPCPP + Mg <br / >
**[[4i2c]] – mTdT catalytic domain + AMPCPP + Mn <br / >
**[[4i2a]] – mTdT catalytic domain + UMP derivative + Mg <br / >
Terminal deoxynucleotidyl transferase ternary complex with DNA
**[[4i2e]] – mTdT catalytic domain + AMPCPP + Co + DNA <br / >
**[[4i2h]] – mTdT catalytic domain + AMPCPP + Zn + Mg + DNA <br / >
**[[4i27]] – mTdT catalytic domain + TTP derivative + TMP + Mg + DNA <br / >
**[[1kdh]] – mTdT catalytic domain + UMP derivative + Mg + DNA <br / >
**[[4i28]], [[4i2f]] – mTdT catalytic domain + Mg + Zn + DNA<br / >
**[[4i2g]] – mTdT catalytic domain + Mg + Co + DNA<br / >
}}
== References ==
== References ==
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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky, David Canner, Michal Harel, Joel L. Sussman, Cori Damron, Emily Bray, Jaime Prilusky