6ac7: Difference between revisions
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==Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoter== | ==Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoter== | ||
<StructureSection load='6ac7' size='340' side='right'caption='[[6ac7 | <StructureSection load='6ac7' size='340' side='right'caption='[[6ac7]]' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[6ac7]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AC7 OCA]. For a <b>guided tour on the structure components</b> use [ | <table><tr><td colspan='2'>[[6ac7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AC7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6AC7 FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ac7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ac7 OCA], [https://pdbe.org/6ac7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ac7 RCSB], [https://www.ebi.ac.uk/pdbsum/6ac7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ac7 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Homo sapiens]] | |||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: | [[Category: Balasubramanian S]] | ||
[[Category: | [[Category: Chambers VS]] | ||
[[Category: | [[Category: Di Antonio M]] | ||
[[Category: Phan | [[Category: Phan AT]] | ||
[[Category: Sengar | [[Category: Sengar A]] | ||
[[Category: Vandana | [[Category: Vandana JJ]] | ||
[[Category: Winnerdy | [[Category: Winnerdy FR]] | ||
Latest revision as of 13:36, 14 June 2023
Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoterStructure of a (3+1) hybrid G-quadruplex in the PARP1 promoter
Structural highlights
Publication Abstract from PubMedPoly (ADP-ribose) polymerase 1 (PARP1) has emerged as an attractive target for cancer therapy due to its key role in DNA repair processes. Inhibition of PARP1 in BRCA-mutated cancers has been observed to be clinically beneficial. Recent genome-mapping experiments have identified a non-canonical G-quadruplex-forming sequence containing bulges within the PARP1 promoter. Structural features, like bulges, provide opportunities for selective chemical targeting of the non-canonical G-quadruplex structure within the PARP1 promoter, which could serve as an alternative therapeutic approach for the regulation of PARP1 expression. Here we report the G-quadruplex structure formed by a 23-nucleotide G-rich sequence in the PARP1 promoter. Our study revealed a three-layered intramolecular (3+1) hybrid G-quadruplex scaffold, in which three strands are oriented in one direction and the fourth in the opposite direction. This structure exhibits unique structural features such as an adenine bulge and a G.G.T base triple capping structure formed between the central edgewise loop, propeller loop and 5' flanking terminal. Given the highly important role of PARP1 in DNA repair and cancer intervention, this structure presents an attractive opportunity to explore the therapeutic potential of PARP1 inhibition via G-quadruplex DNA targeting. Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoter.,Sengar A, Vandana JJ, Chambers VS, Di Antonio M, Winnerdy FR, Balasubramanian S, Phan AT Nucleic Acids Res. 2018 Dec 15. pii: 5248355. doi: 10.1093/nar/gky1179. PMID:30551210[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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